Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0422 ATGCCCTATCTGCAGGAGAAGATAGTAAGGTTTCAGGACTGGAGTTCAGATAAAGCATCAAGGTGGTTATATTCTTCAGATGACACTTCAAATGCCGGAATGAATGTGACAAGAGCTGCCTTAGTTTCAGAAAAGCCTCACAAAGAATTGGAAACTGGTTCTAACAGGATGAGTAAAATTAAGAAATCCTTGAAATCGTCTTCTTTCAATAAATTTATGTTCACAGGTTTCGGAATCGGAAAAAATGTACTTGATCCACAGGGGCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCATTGGATCCTTTGTTCTTTTATGTCCCTGTGATGGATAACAAACAGAAATGTCTTGGGTTGGATAAGAAGATGGAGATTACGGCTAGTGTGTTACGTTCATTCACCGACTTATTTTATATATTACATATTGTTTTTCAATTTCGCACGGGATATATCATTCCTTCTTCTCGAGTATTTGGAAGAGGTGAACTAGTTGAAGAGGCTTGGGCAATAGCAAAGAGATATCTGGCATCATACTTTTTTATCGACATTCTTGCAGTACTCCCACTTCCACAAATAGTGATTCTGATAATTATTCCAAACATAAAAGGCTCGAGCTCATTGAATACCAAAGATTTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCGCGGTTTATTAGAATTTATCCTTTGTATAAAGAAGTGACAAGAACATCTGTACTCACTGAAACTGCTTGGGCTGGGGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGCCATGTCTTTGGAGCATTTTGGTACTTGTTCTCTATAGAACGGGAAACTACATGCTGGCAGAGGGCTTGTCATAATATTAGCTGTGATCCTATTTCACTATATTGTGATGTTTCTGTCAATTTGCGAAATAACTCATTTTTAAACATTTCATGTCCTCTAGTGGATGGAAAAAAAGACAAACCACCTTTTGATTTTGGGATATTTCTTGATGCTCTTAATTCTGGTGTTGTGGAGTCCATGGATTTTCCACAGAAGTTCTTCTACTGTTTCTGGTGGGGTCTGAGAAACCTAAGTTCCCTGGGTCAAAATCTTCAAACAAGCACATACGTATGGGAAGTTTTGTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTTCTGTTTTCATTTCTCATCGGAAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTCAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGCTTACTCCCCGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAACAGTACAAATGGCAGGAGACCAGAGGTGTTGATGAAGAGAATCTGGTTCGAAATCTTCCAAAAGATCTCAGAAGGGACATAAAACGCCATTTCTGCTTGTCTCTGCTAATGAGGGTACCAATATTTGAAAAAATGGACGAACAACTGCTGGATGCGATGTGTGACCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTACATCGTTAGGGAAGGAGATCCGGTGGACGAGATGATCTTCATTATGCGAGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCGACGAGAACCGTTCGAACTCTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCAGATGACTTAAAGTCCGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTCTATTCGCAGCAATGGAGGACATGGGCAGCATGCTTTATACAAGCAGCGTGGCGTCGATACAGAAGAAAGAAGCTCGAACAGGTGCTCTTGGAAGAGGAGAACAGGTTAAAAGATGCATTGGCCAAAACAGGTGGGAGTTCTCCTAGTTTAGGTGCCACCATCTATGCATCTAGATTTGCAGCTAACATCCTTGGAACGATTCGACGCACAAGCTCACATAAGGCCAGGATTTCGGAGAGAATACCACCCATGTTGCTTCAGAAACCAGCAGAGCCTGATTTTACCTCTGAAAATAGTTTATAG 2148 41.53 MPYLQEKIVRFQDWSSDKASRWLYSSDDTSNAGMNVTRAALVSEKPHKELETGSNRMSKIKKSLKSSSFNKFMFTGFGIGKNVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVMDNKQKCLGLDKKMEITASVLRSFTDLFYILHIVFQFRTGYIIPSSRVFGRGELVEEAWAIAKRYLASYFFIDILAVLPLPQIVILIIIPNIKGSSSLNTKDLLKFVVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQRACHNISCDPISLYCDVSVNLRNNSFLNISCPLVDGKKDKPPFDFGIFLDALNSGVVESMDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEVLFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHFCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKSVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKLEQVLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILGTIRRTSSHKARISERIPPMLLQKPAEPDFTSENSL 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2835168 2843153 - Sed0014467.1 Sed05g0422 713048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0422 715 Coils Coil 637 657 - -
Sed05g0422 715 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Sed05g0422 715 Pfam Cyclic nucleotide-binding domain 506 599 IPR000595 -
Sed05g0422 715 Gene3D Jelly Rolls 483 603 IPR014710 -
Sed05g0422 715 SUPERFAMILY Voltage-gated potassium channels 85 407 - -
Sed05g0422 715 Gene3D Helix hairpin bin 411 476 - -
Sed05g0422 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 49 699 - -
Sed05g0422 715 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Sed05g0422 715 Pfam Ion transport protein 95 412 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0422 715 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Sed05g0422 715 Gene3D - 97 409 - -
Sed05g0422 715 CDD CAP_ED 485 616 IPR000595 -
Sed05g0422 715 SMART cnmp_10 485 616 IPR000595 -
Sed05g0422 715 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3502 Sed-Chr1:64132152 Sed05g0422 Sed-Chr5:2835168 0.00E+00 dispersed
Sed05g0422 Sed-Chr5:2835168 Sed13g0080 Sed-Chr13:510575 2.80E-250 dispersed
Sed05g0422 Sed-Chr5:2835168 Sed05g0423 Sed-Chr5:2835168 0.00E+00 tandem
Sed01g3501 Sed-Chr1:64132152 Sed05g0422 Sed-Chr5:2835168 0.00E+00 wgd
Sed13g0079 Sed-Chr13:510575 Sed05g0422 Sed-Chr5:2835168 3.70E-249 wgd
Sed02g1743 Sed-Chr2:52318503 Sed05g0422 Sed-Chr5:2835168 8.00E-151 wgd
Sed05g0422 Sed-Chr5:2835168 Sed07g0823 Sed-Chr7:6066666 1.00E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0422 K05391 - csv:101221781 1270.76