Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0479 ATGTTGTCTCTTCCAAAGCTTCTTTTCCTCAGCTTCTGCTTTTCCTCGTTTCAAGCTCGAACGTATATTGTATACATGGGGAGTCATTCAAAAGACAAAGTTTCAACTTCATCTCATCACATGAGAATGCTACAAGAAACTATTGGCAGCACTTTTTCTCCACACCGTTTACTCCATAGCTACAAGAGAAGTTTTAATGGGTTTGTGGTGAAGTTGAGTGAAGCGGAAGCACAAAAAATTTCAGAAATGGAAGGTGTGATATCAGTTTTTCGAAATGGAAGAAAAGAACTACACACAACAAGATCATGGGACTTCATGGGTCTGTCTCAACAAGCTAGTCGAGTTCCATCTATAGAAAGTGATATCATTGTTGGAGTATTTGACTCAGGCATCTGGCCCGAATCACCTAGTTTTAACGACACAGGATATAGCCCACCACCACCTAAGTGGAAGGGTATTTGTGAAGTGTCTGCCAATTTCTCTTGTAACAATAAAATCATTGGAGCTCGATCATACCGCAGCGATGGTTTGTATTCACAAACCGATCTCCAAAGTCCAAGAGATTCAGATGGCCATGGAACCCACACAGCATCAACGGTGGCAGGTGGGTTGGTTCGGCAAGCGAGCATGCTCGGTCTCGGCTTGGGCACAGCAAGGGGAGGAGTCCCATCGGCACGAATTGCTGCCTACAAAATATGTTGGTCGGACGGTTGCTACGACGCCGACATTCTTGCTGCATTCGACGATGCCATTGCGGATGGGGTCGACATCATCTCTTTCTCGGTCGGAGGAGGAAGCCCGAAATATTACTTCAACGACTCGATTGCGATCGGAGCTTTCCATGCAATGAAGAAAGGAATCCTTACGTCAATGTCAGCTGGAAACGACGGTCCAGACTTTTTCACAATTAGAAACTTCTCGCCATGGTCTTTGTCTGTGGCGGCTAGCACAACTGATAGGAGATTTTTGACTGGAGTTCAACTTGGAGATGGAACAAATTTCACCGGAGTCACCATTAATACATTTGATCTAAATGGAACACAATATCCATTGGTGTACGCCGGAGATATACCAAACATTACTGCTGGCTTTAATGCATCTAGATCCAGATTTTGCTTGGAAAACTCAGTGGACAAGGAGTTAGTGAGGGGTAAAATTACCCTTTGTGATTCAATTTTATCTCCAAAAGAATTGGGTTCTTTAAAAAATGCAATTGGGATTATAATGCAAGACAGATCTCCAAAAGATCTCACATCCTCTTTTCCCTTGCCTGCCTCCCACCTTGGAACACAGCAAGGTCTCATTTCTTCATATATCAACTTAACAAGCCTTCCAACAGCAACTATACTAAAAAGTACAGAAGGGAAAACATCTACTTTTGTTGCATCTTTCTCTTCAAGGGGTCCAAATCCAATAACACTTGACATTCTTAAGCCAGATTTGAGTGGTCCAGGAGTTGAAATTCTTGCAGCATGGTCTCCCATAGGTTCACCTTCAGGAGCTAAAGATGATAATAGAAATATTTTGTATAATATAATTTCAGGGACTTCAATGTCTTGTCCACATGCTACTGCAGTTGCTGCCTATGTTAAATCATTCCATCCTTCTTGGTCTCCTGCTGCACTTAAATCAGCTCTTATGACGACAGCATTTCCCATGAAAGCAGAGCTAAACTCAGATGCAGAGTTCGCATATGGTTCAGGCCATATAAATCCATTAAGCGCAATAAATCCAGGATTAATTTACAATGCTACAGAAATTGACTATATAAGGTTTCTATGTGGTCAAGGTTATAGCACAAAACAACTCCAACAAGTCTCTGAAGATAACAATACTTGCAATTCTGCAAATAATTTTGACACAGTTTTCAATTTAAATTACCCTTCATTTGCTCTTTCCACAACAATCTCAACTCCAATCAGCCAAGTTTACAAAAGAAGGGTCACAAATGTTGGGTCAGCAAACTCAACATACAAAGCTTCAATATTTGCTCCTTTGGGACTTAATATTATTGTGAATCCTTCTGTACTTTCATTCAAAGCTTTGGGAGAAGAGAAAAATTTTGAGGTTACAATTGAAGGAAGTATTGATAGTGGCATTGCATCAGCTTCCTTGGTGTGGGATGATGGCCTACACAAAGTTAGGAGTCCTATCACTGTCTTTGATGCTAATACATTTGTTACCAATTAA 2190 41.1 MLSLPKLLFLSFCFSSFQARTYIVYMGSHSKDKVSTSSHHMRMLQETIGSTFSPHRLLHSYKRSFNGFVVKLSEAEAQKISEMEGVISVFRNGRKELHTTRSWDFMGLSQQASRVPSIESDIIVGVFDSGIWPESPSFNDTGYSPPPPKWKGICEVSANFSCNNKIIGARSYRSDGLYSQTDLQSPRDSDGHGTHTASTVAGGLVRQASMLGLGLGTARGGVPSARIAAYKICWSDGCYDADILAAFDDAIADGVDIISFSVGGGSPKYYFNDSIAIGAFHAMKKGILTSMSAGNDGPDFFTIRNFSPWSLSVAASTTDRRFLTGVQLGDGTNFTGVTINTFDLNGTQYPLVYAGDIPNITAGFNASRSRFCLENSVDKELVRGKITLCDSILSPKELGSLKNAIGIIMQDRSPKDLTSSFPLPASHLGTQQGLISSYINLTSLPTATILKSTEGKTSTFVASFSSRGPNPITLDILKPDLSGPGVEILAAWSPIGSPSGAKDDNRNILYNIISGTSMSCPHATAVAAYVKSFHPSWSPAALKSALMTTAFPMKAELNSDAEFAYGSGHINPLSAINPGLIYNATEIDYIRFLCGQGYSTKQLQQVSEDNNTCNSANNFDTVFNLNYPSFALSTTISTPISQVYKRRVTNVGSANSTYKASIFAPLGLNIIVNPSVLSFKALGEEKNFEVTIEGSIDSGIASASLVWDDGLHKVRSPITVFDANTFVTN 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3276797 3288867 + Sed0004524.1 Sed05g0479 713105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0479 729 FunFam Subtilisin-like protease SBT1.5 121 329 - -
Sed05g0479 729 PRINTS Subtilisin serine protease family (S8) signature 514 530 IPR015500 -
Sed05g0479 729 PRINTS Subtilisin serine protease family (S8) signature 119 138 IPR015500 -
Sed05g0479 729 PRINTS Subtilisin serine protease family (S8) signature 188 201 IPR015500 -
Sed05g0479 729 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 21 718 IPR045051 -
Sed05g0479 729 ProSitePatterns Serine proteases, subtilase family, serine active site. 515 525 IPR023828 -
Sed05g0479 729 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 98 IPR037045 -
Sed05g0479 729 SUPERFAMILY Subtilisin-like 97 580 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed05g0479 729 Pfam Subtilase family 120 566 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed05g0479 729 Gene3D - 593 722 - -
Sed05g0479 729 ProSiteProfiles Serine proteases, subtilase domain profile. 102 576 - -
Sed05g0479 729 CDD PA_subtilisin_like 326 449 - -
Sed05g0479 729 FunFam Subtilisin-like protease SBT5.3 14 98 - -
Sed05g0479 729 CDD Peptidases_S8_3 95 550 IPR034197 -
Sed05g0479 729 Pfam Peptidase inhibitor I9 21 98 IPR010259 -
Sed05g0479 729 Gene3D Peptidase S8/S53 domain 121 589 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed05g0479 729 Pfam Fibronectin type-III domain 624 720 IPR041469 -
Sed05g0479 729 Gene3D - 319 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3026 Sed-Chr4:41427031 Sed05g0479 Sed-Chr5:3276797 3.3e-310 dispersed
Sed05g0479 Sed-Chr5:3276797 Sed09g0258 Sed-Chr9:2064825 0.00E+00 dispersed
Sed05g0478 Sed-Chr5:3265826 Sed05g0479 Sed-Chr5:3276797 0.00E+00 tandem
Sed05g0479 Sed-Chr5:3276797 Sed05g0480 Sed-Chr5:3289585 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0479 - - - 0.0