Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0485 ATGCCTCCATGGTGGGCGAAGTCATCATCAAAAGAAGCAAGTAAGAGCAAGGAAAGTTTCATTGACACATTGCAGAGAAAACTTAGAACCATTGATGCTAAAACAAACAGAAAATCAGGAAGGTCTACAAGAAACTTTAACGATACAATTTCTGAGCAGGGATCTCGATCTCCTATTCTTTCGAGATCAGTTTCACCATCCAAACAAGTTTTGAGATGTCAAAGCTTTTCTGAAAAGCCACAAGCACAACCTCTTCCACTTCCTAGTGTGCAGCCGCCAATTGTAAGTCGTACAGACTCCGGGATTAATATTTCGCCAAAACCAAAATCTCATAGAGGCTCCAAGCTATCATCATATCTACCACTTTCGAGACCAGCATGCATCCGTAGGAGGCCAAATCATGCAGATTTAGATGCAGATCTTGGTGTTGGCTCGTTGTCCAATGAGAGCTCAGTTGATAGCACGGGTCAACCAGATTCACGCCTTCATAGTCCTCAGGCAACTGATTATGATTTTTGTACTAAAACTGCTGCAAGCAGTCCTTCTAGTGTAATTATCAGGGACCAGTCCTCTATCGCCACACCACCAAGTTTGCAAGAGCCCATAAATTTGACTAATATTTCATTGGGCAACCACATTTTCTCTACATCTCCCAAGCGAAGACCTTTAAGCAGTCATGTTCCAAATCTGCAAGTTCCATATCATGGAAATTTATGTATTGCTCCAGACAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATGAGGCCATTTAGCACAGAGCAAGTTGTTAACAATGTTGTTAATGCGGGAAAGTTCTATATGGATCTCACCTTTCCTGGATCAGGTCATTGTTCTAGTCCTGGTTCTGGTTACAATTCTGGACATAATTCTATGGGTGGTGATTTGTCTGGGCAGTTATTTTTGCAACAAAGTCGGGGTAGCCCAGAATATTCACCAGCACTTAGTCCCAGAATGACCAGCCCTGGCCCTAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGAGCAGGAGGGATACCTAGTGAGTCACATACAAGTTGGCCCGATGAGAAGCAAACACACCGCTTGCCTCTACCTCCGGTTACAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACGTCTCCCTCTGTTCCAAGAAGTCCCGGAAGGGCCGATAATCCAGCAAGCCCAAGCTACCGTTGGAAAAAGGGGAAGCTCTTGGGTAGGGGTACTTTTGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGCTTACGGCATCCAAATATTGTGCAGTATTATGGATCTGAAACGGTTGGCGACAGGCTATACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAAGATTATGGACCGCTCGGAGAGTCAGCACTTCGTAGTTATACTAAGCAAATATTGTCCGGGCTTGCATTTTTACATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATTTGCTTGTTGATCCTACCGGGCGTGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACTGGGCAGTCGTGCCCTTTGTCTTTTAAAGGCAGCCCATACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAACCTTGCTGTGGATATTTGGAGTCTTGGATGCACTGTTTTGGAAATGGCAACAACCAAACCTCCTTGGAGTCAATATGAGGGAGTTGCTGCAATGTTTAAGATTGGCAACGGCAAAGAACTTCCTGAAATTCCGAATCACCTTTCCCATGACGGAAAAGACTTTGTCAGACATTGTCTGCAACGGAATCCAGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATTCTTTTGTCAAACATGCTGCACCTCTTGAGAGACCGATTTTGGGTTCTGAACATTCAGGTCCAACTCCAGGAATTACAAAGGGAGTAAGACTTCTGGGTATTGAGTCAGGAAGAAATCCCAGTTTCTTGGATTCTGACAGATCTGCAGCTCATCCATCCAGACTCTCTACAGCTGTTTTTCATTCCAGTGAAATCTATATACCGAGAAACCTTTCATGTCCCGTTTCGCCCATTGGAAGCCCTCTAGTGCACTCACGGTCACAACATCCGAGTGGAAGAATGTCTCCGTCGCCCATCTCTAGCCCTCGGAACTTATCGGGCGCATCCACTCCTCTCACGGGAGGAAACGGTGCTATTCCACGCCAGCACTTCAATCAATCACTGTATCTACAAGAGGGTTTTGGGAGATTGCCAAAGCCTTCAATAGGTCCCTATAGTAACGGCCCTCCATATCATGAAACGAACACCGACATCTTTCAGGGGATTCAGCCAAGCTCTCACATCTTCTCTGAGCAGTTTGGAAAGCCTGCCTGGGAATTGTACGACGGGCAGGCGGTCTTGGCCGATCGCGTTTCTAGGCAGCTGCTCAGTGATCACATAACAGCTCCCACCCTGGATTTAAGTTCAAGCTCTCCTTTGACCAACCGTAGATAG 2634 45.22 MPPWWAKSSSKEASKSKESFIDTLQRKLRTIDAKTNRKSGRSTRNFNDTISEQGSRSPILSRSVSPSKQVLRCQSFSEKPQAQPLPLPSVQPPIVSRTDSGINISPKPKSHRGSKLSSYLPLSRPACIRRRPNHADLDADLGVGSLSNESSVDSTGQPDSRLHSPQATDYDFCTKTAASSPSSVIIRDQSSIATPPSLQEPINLTNISLGNHIFSTSPKRRPLSSHVPNLQVPYHGNLCIAPDSSMSSPSRSPMRPFSTEQVVNNVVNAGKFYMDLTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPALSPRMTSPGPSSRVHSGAVTPIHPRAGGIPSESHTSWPDEKQTHRLPLPPVTISNAPFSHSNSAATSPSVPRSPGRADNPASPSYRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQDYGPLGESALRSYTKQILSGLAFLHAKSTVHRDIKGANLLVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNGKELPEIPNHLSHDGKDFVRHCLQRNPAHRPTAAQLLEHSFVKHAAPLERPILGSEHSGPTPGITKGVRLLGIESGRNPSFLDSDRSAAHPSRLSTAVFHSSEIYIPRNLSCPVSPIGSPLVHSRSQHPSGRMSPSPISSPRNLSGASTPLTGGNGAIPRQHFNQSLYLQEGFGRLPKPSIGPYSNGPPYHETNTDIFQGIQPSSHIFSEQFGKPAWELYDGQAVLADRVSRQLLSDHITAPTLDLSSSSPLTNRR 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3351227 3358048 - Sed0009456.1 Sed05g0485 713111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0485 877 MobiDBLite consensus disorder prediction 139 167 - -
Sed05g0485 877 FunFam Mitogen-activated protein kinase kinase kinase 405 685 - -
Sed05g0485 877 MobiDBLite consensus disorder prediction 30 118 - -
Sed05g0485 877 Gene3D Transferase(Phosphotransferase) domain 1 405 676 - -
Sed05g0485 877 MobiDBLite consensus disorder prediction 283 334 - -
Sed05g0485 877 SMART serkin_6 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0485 877 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Sed05g0485 877 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0485 877 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 14 668 IPR050538 -
Sed05g0485 877 MobiDBLite consensus disorder prediction 144 167 - -
Sed05g0485 877 MobiDBLite consensus disorder prediction 42 84 - -
Sed05g0485 877 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0485 877 CDD STKc_MEKK1_plant 406 663 - -
Sed05g0485 877 MobiDBLite consensus disorder prediction 741 780 - -
Sed05g0485 877 MobiDBLite consensus disorder prediction 93 112 - -
Sed05g0485 877 MobiDBLite consensus disorder prediction 283 406 - -
Sed05g0485 877 MobiDBLite consensus disorder prediction 374 393 - -
Sed05g0485 877 SUPERFAMILY Protein kinase-like (PK-like) 406 748 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0485 Sed-Chr5:3351227 Sed13g0133 Sed-Chr13:862964 0.00E+00 dispersed
Sed05g0485 Sed-Chr5:3351227 Sed05g0486 Sed-Chr5:3351227 0.00E+00 tandem
Sed01g3577 Sed-Chr1:64904234 Sed05g0485 Sed-Chr5:3351227 0.00E+00 wgd
Sed05g0485 Sed-Chr5:3351227 Sed07g1017 Sed-Chr7:7384815 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79120 PF00069 Pkinase 3.70E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0485 K20717 - csv:101222716 1536.16