Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0485 | ATGCCTCCATGGTGGGCGAAGTCATCATCAAAAGAAGCAAGTAAGAGCAAGGAAAGTTTCATTGACACATTGCAGAGAAAACTTAGAACCATTGATGCTAAAACAAACAGAAAATCAGGAAGGTCTACAAGAAACTTTAACGATACAATTTCTGAGCAGGGATCTCGATCTCCTATTCTTTCGAGATCAGTTTCACCATCCAAACAAGTTTTGAGATGTCAAAGCTTTTCTGAAAAGCCACAAGCACAACCTCTTCCACTTCCTAGTGTGCAGCCGCCAATTGTAAGTCGTACAGACTCCGGGATTAATATTTCGCCAAAACCAAAATCTCATAGAGGCTCCAAGCTATCATCATATCTACCACTTTCGAGACCAGCATGCATCCGTAGGAGGCCAAATCATGCAGATTTAGATGCAGATCTTGGTGTTGGCTCGTTGTCCAATGAGAGCTCAGTTGATAGCACGGGTCAACCAGATTCACGCCTTCATAGTCCTCAGGCAACTGATTATGATTTTTGTACTAAAACTGCTGCAAGCAGTCCTTCTAGTGTAATTATCAGGGACCAGTCCTCTATCGCCACACCACCAAGTTTGCAAGAGCCCATAAATTTGACTAATATTTCATTGGGCAACCACATTTTCTCTACATCTCCCAAGCGAAGACCTTTAAGCAGTCATGTTCCAAATCTGCAAGTTCCATATCATGGAAATTTATGTATTGCTCCAGACAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATGAGGCCATTTAGCACAGAGCAAGTTGTTAACAATGTTGTTAATGCGGGAAAGTTCTATATGGATCTCACCTTTCCTGGATCAGGTCATTGTTCTAGTCCTGGTTCTGGTTACAATTCTGGACATAATTCTATGGGTGGTGATTTGTCTGGGCAGTTATTTTTGCAACAAAGTCGGGGTAGCCCAGAATATTCACCAGCACTTAGTCCCAGAATGACCAGCCCTGGCCCTAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGAGCAGGAGGGATACCTAGTGAGTCACATACAAGTTGGCCCGATGAGAAGCAAACACACCGCTTGCCTCTACCTCCGGTTACAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACGTCTCCCTCTGTTCCAAGAAGTCCCGGAAGGGCCGATAATCCAGCAAGCCCAAGCTACCGTTGGAAAAAGGGGAAGCTCTTGGGTAGGGGTACTTTTGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGCTTACGGCATCCAAATATTGTGCAGTATTATGGATCTGAAACGGTTGGCGACAGGCTATACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAAGATTATGGACCGCTCGGAGAGTCAGCACTTCGTAGTTATACTAAGCAAATATTGTCCGGGCTTGCATTTTTACATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATTTGCTTGTTGATCCTACCGGGCGTGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACTGGGCAGTCGTGCCCTTTGTCTTTTAAAGGCAGCCCATACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAACCTTGCTGTGGATATTTGGAGTCTTGGATGCACTGTTTTGGAAATGGCAACAACCAAACCTCCTTGGAGTCAATATGAGGGAGTTGCTGCAATGTTTAAGATTGGCAACGGCAAAGAACTTCCTGAAATTCCGAATCACCTTTCCCATGACGGAAAAGACTTTGTCAGACATTGTCTGCAACGGAATCCAGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAGCATTCTTTTGTCAAACATGCTGCACCTCTTGAGAGACCGATTTTGGGTTCTGAACATTCAGGTCCAACTCCAGGAATTACAAAGGGAGTAAGACTTCTGGGTATTGAGTCAGGAAGAAATCCCAGTTTCTTGGATTCTGACAGATCTGCAGCTCATCCATCCAGACTCTCTACAGCTGTTTTTCATTCCAGTGAAATCTATATACCGAGAAACCTTTCATGTCCCGTTTCGCCCATTGGAAGCCCTCTAGTGCACTCACGGTCACAACATCCGAGTGGAAGAATGTCTCCGTCGCCCATCTCTAGCCCTCGGAACTTATCGGGCGCATCCACTCCTCTCACGGGAGGAAACGGTGCTATTCCACGCCAGCACTTCAATCAATCACTGTATCTACAAGAGGGTTTTGGGAGATTGCCAAAGCCTTCAATAGGTCCCTATAGTAACGGCCCTCCATATCATGAAACGAACACCGACATCTTTCAGGGGATTCAGCCAAGCTCTCACATCTTCTCTGAGCAGTTTGGAAAGCCTGCCTGGGAATTGTACGACGGGCAGGCGGTCTTGGCCGATCGCGTTTCTAGGCAGCTGCTCAGTGATCACATAACAGCTCCCACCCTGGATTTAAGTTCAAGCTCTCCTTTGACCAACCGTAGATAG | 2634 | 45.22 | MPPWWAKSSSKEASKSKESFIDTLQRKLRTIDAKTNRKSGRSTRNFNDTISEQGSRSPILSRSVSPSKQVLRCQSFSEKPQAQPLPLPSVQPPIVSRTDSGINISPKPKSHRGSKLSSYLPLSRPACIRRRPNHADLDADLGVGSLSNESSVDSTGQPDSRLHSPQATDYDFCTKTAASSPSSVIIRDQSSIATPPSLQEPINLTNISLGNHIFSTSPKRRPLSSHVPNLQVPYHGNLCIAPDSSMSSPSRSPMRPFSTEQVVNNVVNAGKFYMDLTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPALSPRMTSPGPSSRVHSGAVTPIHPRAGGIPSESHTSWPDEKQTHRLPLPPVTISNAPFSHSNSAATSPSVPRSPGRADNPASPSYRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQDYGPLGESALRSYTKQILSGLAFLHAKSTVHRDIKGANLLVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNGKELPEIPNHLSHDGKDFVRHCLQRNPAHRPTAAQLLEHSFVKHAAPLERPILGSEHSGPTPGITKGVRLLGIESGRNPSFLDSDRSAAHPSRLSTAVFHSSEIYIPRNLSCPVSPIGSPLVHSRSQHPSGRMSPSPISSPRNLSGASTPLTGGNGAIPRQHFNQSLYLQEGFGRLPKPSIGPYSNGPPYHETNTDIFQGIQPSSHIFSEQFGKPAWELYDGQAVLADRVSRQLLSDHITAPTLDLSSSSPLTNRR | 877 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3351227 | 3358048 | - | Sed0009456.1 | Sed05g0485 | 713111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 139 | 167 | - | - | |
Sed05g0485 | 877 | FunFam | Mitogen-activated protein kinase kinase kinase | 405 | 685 | - | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 30 | 118 | - | - | |
Sed05g0485 | 877 | Gene3D | Transferase(Phosphotransferase) domain 1 | 405 | 676 | - | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 283 | 334 | - | - | |
Sed05g0485 | 877 | SMART | serkin_6 | 407 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0485 | 877 | ProSitePatterns | Protein kinases ATP-binding region signature. | 413 | 436 | IPR017441 | GO:0005524(InterPro) | |
Sed05g0485 | 877 | ProSiteProfiles | Protein kinase domain profile. | 407 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0485 | 877 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 14 | 668 | IPR050538 | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 144 | 167 | - | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 42 | 84 | - | - | |
Sed05g0485 | 877 | Pfam | Protein kinase domain | 408 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0485 | 877 | CDD | STKc_MEKK1_plant | 406 | 663 | - | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 741 | 780 | - | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 93 | 112 | - | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 283 | 406 | - | - | |
Sed05g0485 | 877 | MobiDBLite | consensus disorder prediction | 374 | 393 | - | - | |
Sed05g0485 | 877 | SUPERFAMILY | Protein kinase-like (PK-like) | 406 | 748 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0485 | Sed-Chr5:3351227 | Sed13g0133 | Sed-Chr13:862964 | 0.00E+00 | dispersed | |
Sed05g0485 | Sed-Chr5:3351227 | Sed05g0486 | Sed-Chr5:3351227 | 0.00E+00 | tandem | |
Sed01g3577 | Sed-Chr1:64904234 | Sed05g0485 | Sed-Chr5:3351227 | 0.00E+00 | wgd | |
Sed05g0485 | Sed-Chr5:3351227 | Sed07g1017 | Sed-Chr7:7384815 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79120 | PF00069 | Pkinase | 3.70E-70 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0485 | K20717 | - | csv:101222716 | 1536.16 |