Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0502 ATGTTGATTCAGATGGTAGCAGCTATTGGGTTACTCATAATTGGCTTATTTATTTTGTTCTTGTTTAGGGTTTTGTATTGTTGTTGGATTTCTCCATTTTTAGTGCACAAAAAGCTTAAAGCAAATGGATTTGGAGGTCCAACTCCAAGTTTTCCTCTTGGAAATATCAGTGAGATGAAAAAGAAGAACCTCAATCCCATAGTCGAGTTTTCTCGAGTCACCCACGACATACATTCGATCGTCTTTCCCTATTTTTCTCGATGGCAAACTGACCATGGGAAAATATTTACATATTGGTTGGGAACAGAACCATTTTTGTACATAGCAGAGCCAGAATTTGTGAAAATATTATCAAATGAAGTGAAAGCAAAGTACTGGGGAAAGCCATCAGTGTTCAAACGTGACAGAAAATCAATGTTTGGAAATGGTTTAGTGATGGCTGAAGGAGATGAGTGGGTTCGCCAAAGACATCTCATTACTCCTGCTTTTAATCCTTCCAATTTAAAGGCAATGGCAAGTTTAATGGTGGAGTCCGCCACCCAAATGGTCGACAAATGGGCCGATCTGGTTCGCTCCGGCCGCCGTGAAATTGAAGTTGAAACCGAAATAACTTCCACCGCCGGCGAAATCATCGCCAAAACCAGCTTCGGAATCGACCACAAAAGCGGCCGCCAAGTGTTCCACAAACTCAGACAGCTCCAAATGACACTCTTCAAAACCAACCGCCTCGTCGGAGTCCCCTTCGCCGGCTTCCTGAATTCCGGCAAGGCCCGGGAGGCGAAACGCCTCGGTGACGAGATCGACGAGCTGTTCCGGGCGGTGATCACGGCGAGGAGAGAAAATCAGGAGGCGACCGAGGCGATGGCGGAGAATGATCTGTTGAGTTTGCTTTTGAAAGAGAACGGCGGCGGAGAGGGGCGGCGGCGGCGGCTGAGCACGGCGGAGCTGATTGATGAGTGTAAAACGTTTTTCTTTGGTGGACATGAAACGACGGCGTTGGCTCTGACGTGGACTTTGCTGCTTTTGGGTATTCATTGTGAGTGGCAAAAGCAGTTGAGAGAGGAGATTAAGGAAGTGCTTGGGGATAATGTGAGTGAATTTGATTTCACTAAGCTTTCTCAACTCAAAAAGATGGGATGGGTGATGAGCGAGGTTCTACGACTATACCCGTCAGCGCCTAACGTACAAAGACAAGCAAGAAAAGATATAACAATAAACGGACTCACAATTCCGAATGGCACCAACATGTGGATCGATGTCGTAGCCATGCATCACGATCAAGCCCTTTGGGGTGACCAAGTCAACGAGTTTCGACCAGGGAGGTTCCAAAATGATACCATTTCTGGCGGCTGCACCCACAAGATGGGCTACTTGCCATTTGGGTTTGGAGGAAGAATGTGCGTTGGAAGGAACTTGACGTTCATGGAATATAAGATTGTTTTGACACTTATTTTGTCTAGATTTTCCTTCTCTCTGTCTCCGGATTACTGCCACTCGCCTTCTATTATGCTCTCGCTTCGGCCTGCCCATGGTTTACCTCTAATTTTTCAACTACTCGAAGATTAA 1566 46.23 MLIQMVAAIGLLIIGLFILFLFRVLYCCWISPFLVHKKLKANGFGGPTPSFPLGNISEMKKKNLNPIVEFSRVTHDIHSIVFPYFSRWQTDHGKIFTYWLGTEPFLYIAEPEFVKILSNEVKAKYWGKPSVFKRDRKSMFGNGLVMAEGDEWVRQRHLITPAFNPSNLKAMASLMVESATQMVDKWADLVRSGRREIEVETEITSTAGEIIAKTSFGIDHKSGRQVFHKLRQLQMTLFKTNRLVGVPFAGFLNSGKAREAKRLGDEIDELFRAVITARRENQEATEAMAENDLLSLLLKENGGGEGRRRRLSTAELIDECKTFFFGGHETTALALTWTLLLLGIHCEWQKQLREEIKEVLGDNVSEFDFTKLSQLKKMGWVMSEVLRLYPSAPNVQRQARKDITINGLTIPNGTNMWIDVVAMHHDQALWGDQVNEFRPGRFQNDTISGGCTHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTLILSRFSFSLSPDYCHSPSIMLSLRPAHGLPLIFQLLED 521
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 3448947 3453778 - Sed0001328.1 Sed05g0502 713128
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0502 521 Coils Coil 267 287 - -
Sed05g0502 521 Pfam Cytochrome P450 80 498 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 SUPERFAMILY Cytochrome P450 75 516 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PANTHER CYTOCHROME P450 FAMILY MEMBER 19 513 IPR050665 GO:0004497(PANTHER)
Sed05g0502 521 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 Gene3D Cytochrome P450 33 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed05g0502 521 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PRINTS P450 superfamily signature 467 478 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g0502 521 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0502 Sed-Chr5:3448947 Sed05g2580 Sed-Chr5:37566261 2.80E-90 dispersed
Sed04g2975 Sed-Chr4:41133394 Sed05g0502 Sed-Chr5:3448947 1.30E-82 transposed
Sed01g3583 Sed-Chr1:64936238 Sed05g0502 Sed-Chr5:3448947 1.00E-116 wgd
Sed05g0502 Sed-Chr5:3448947 Sed07g1035 Sed-Chr7:7464848 6.30E-183 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0502 - - - 0.0