Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g0502 | ATGTTGATTCAGATGGTAGCAGCTATTGGGTTACTCATAATTGGCTTATTTATTTTGTTCTTGTTTAGGGTTTTGTATTGTTGTTGGATTTCTCCATTTTTAGTGCACAAAAAGCTTAAAGCAAATGGATTTGGAGGTCCAACTCCAAGTTTTCCTCTTGGAAATATCAGTGAGATGAAAAAGAAGAACCTCAATCCCATAGTCGAGTTTTCTCGAGTCACCCACGACATACATTCGATCGTCTTTCCCTATTTTTCTCGATGGCAAACTGACCATGGGAAAATATTTACATATTGGTTGGGAACAGAACCATTTTTGTACATAGCAGAGCCAGAATTTGTGAAAATATTATCAAATGAAGTGAAAGCAAAGTACTGGGGAAAGCCATCAGTGTTCAAACGTGACAGAAAATCAATGTTTGGAAATGGTTTAGTGATGGCTGAAGGAGATGAGTGGGTTCGCCAAAGACATCTCATTACTCCTGCTTTTAATCCTTCCAATTTAAAGGCAATGGCAAGTTTAATGGTGGAGTCCGCCACCCAAATGGTCGACAAATGGGCCGATCTGGTTCGCTCCGGCCGCCGTGAAATTGAAGTTGAAACCGAAATAACTTCCACCGCCGGCGAAATCATCGCCAAAACCAGCTTCGGAATCGACCACAAAAGCGGCCGCCAAGTGTTCCACAAACTCAGACAGCTCCAAATGACACTCTTCAAAACCAACCGCCTCGTCGGAGTCCCCTTCGCCGGCTTCCTGAATTCCGGCAAGGCCCGGGAGGCGAAACGCCTCGGTGACGAGATCGACGAGCTGTTCCGGGCGGTGATCACGGCGAGGAGAGAAAATCAGGAGGCGACCGAGGCGATGGCGGAGAATGATCTGTTGAGTTTGCTTTTGAAAGAGAACGGCGGCGGAGAGGGGCGGCGGCGGCGGCTGAGCACGGCGGAGCTGATTGATGAGTGTAAAACGTTTTTCTTTGGTGGACATGAAACGACGGCGTTGGCTCTGACGTGGACTTTGCTGCTTTTGGGTATTCATTGTGAGTGGCAAAAGCAGTTGAGAGAGGAGATTAAGGAAGTGCTTGGGGATAATGTGAGTGAATTTGATTTCACTAAGCTTTCTCAACTCAAAAAGATGGGATGGGTGATGAGCGAGGTTCTACGACTATACCCGTCAGCGCCTAACGTACAAAGACAAGCAAGAAAAGATATAACAATAAACGGACTCACAATTCCGAATGGCACCAACATGTGGATCGATGTCGTAGCCATGCATCACGATCAAGCCCTTTGGGGTGACCAAGTCAACGAGTTTCGACCAGGGAGGTTCCAAAATGATACCATTTCTGGCGGCTGCACCCACAAGATGGGCTACTTGCCATTTGGGTTTGGAGGAAGAATGTGCGTTGGAAGGAACTTGACGTTCATGGAATATAAGATTGTTTTGACACTTATTTTGTCTAGATTTTCCTTCTCTCTGTCTCCGGATTACTGCCACTCGCCTTCTATTATGCTCTCGCTTCGGCCTGCCCATGGTTTACCTCTAATTTTTCAACTACTCGAAGATTAA | 1566 | 46.23 | MLIQMVAAIGLLIIGLFILFLFRVLYCCWISPFLVHKKLKANGFGGPTPSFPLGNISEMKKKNLNPIVEFSRVTHDIHSIVFPYFSRWQTDHGKIFTYWLGTEPFLYIAEPEFVKILSNEVKAKYWGKPSVFKRDRKSMFGNGLVMAEGDEWVRQRHLITPAFNPSNLKAMASLMVESATQMVDKWADLVRSGRREIEVETEITSTAGEIIAKTSFGIDHKSGRQVFHKLRQLQMTLFKTNRLVGVPFAGFLNSGKAREAKRLGDEIDELFRAVITARRENQEATEAMAENDLLSLLLKENGGGEGRRRRLSTAELIDECKTFFFGGHETTALALTWTLLLLGIHCEWQKQLREEIKEVLGDNVSEFDFTKLSQLKKMGWVMSEVLRLYPSAPNVQRQARKDITINGLTIPNGTNMWIDVVAMHHDQALWGDQVNEFRPGRFQNDTISGGCTHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTLILSRFSFSLSPDYCHSPSIMLSLRPAHGLPLIFQLLED | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3448947 | 3453778 | - | Sed0001328.1 | Sed05g0502 | 713128 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g0502 | 521 | Coils | Coil | 267 | 287 | - | - | |
| Sed05g0502 | 521 | Pfam | Cytochrome P450 | 80 | 498 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | SUPERFAMILY | Cytochrome P450 | 75 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 19 | 513 | IPR050665 | GO:0004497(PANTHER) | |
| Sed05g0502 | 521 | PRINTS | E-class P450 group I signature | 457 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PRINTS | E-class P450 group I signature | 89 | 108 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PRINTS | E-class P450 group I signature | 315 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PRINTS | E-class P450 group I signature | 467 | 490 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PRINTS | E-class P450 group I signature | 335 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | Gene3D | Cytochrome P450 | 33 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 460 | 469 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed05g0502 | 521 | PRINTS | P450 superfamily signature | 458 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PRINTS | P450 superfamily signature | 467 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PRINTS | P450 superfamily signature | 326 | 343 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0502 | 521 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g0502 | Sed-Chr5:3448947 | Sed05g2580 | Sed-Chr5:37566261 | 2.80E-90 | dispersed | |
| Sed04g2975 | Sed-Chr4:41133394 | Sed05g0502 | Sed-Chr5:3448947 | 1.30E-82 | transposed | |
| Sed01g3583 | Sed-Chr1:64936238 | Sed05g0502 | Sed-Chr5:3448947 | 1.00E-116 | wgd | |
| Sed05g0502 | Sed-Chr5:3448947 | Sed07g1035 | Sed-Chr7:7464848 | 6.30E-183 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g0502 | - | - | - | 0.0 |