Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0530 ATGGAAGTTCCAGAAGCTTCTAATTCCGACGAAACTTATTCACGTTCCGACGAGGATCTCGTATTGGCTTCCCGGAACCCGAAGAAAAGGGCCGGCCGGAAAAAGTTCAACGAAACACGGCACCCTGTTTTTCGCGGGATTCGCCGGCGAAACTCTGGCAAGTGGGTCAGCGAGGTGAGAGAGCCGAACAAGAAGACCAGGATTTGGCTGGGCACTTTTCCGACCGCCGAGATGGCCGCCAGAGCCCACGACGTCGCCGCCATCGCCTTCCGCGGCCGCGCCGCCTGCCTCAATTTCGCCGACTCTGTCTCCGTCCTTCCGGTCCCGGCCTCTCTGGACGCTAAGGATATTCAGAAGGCCGCCGTGGAGGCTGCAGAGGCGTTCCGGCGGCCGGAGAGTACGGCGGCGGCGGCGGCGGAGAAGGAGGAGGAGGAGGTGTTTTGTTTGGACGAGGAGGTGTTTGGGATGCCGGGGTTTATGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCGAGTTCCGTCGACGATGGGTTTCGGGATAATTCGATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCTGTTTGA 594 59.76 MEVPEASNSDETYSRSDEDLVLASRNPKKRAGRKKFNETRHPVFRGIRRRNSGKWVSEVREPNKKTRIWLGTFPTAEMAARAHDVAAIAFRGRAACLNFADSVSVLPVPASLDAKDIQKAAVEAAEAFRRPESTAAAAAEKEEEEVFCLDEEVFGMPGFMADMAEAMLLPPPSSVDDGFRDNSMDFDADMSLWSYSV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3848451 3849646 - Sed0021532.1 Sed05g0530 713156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0530 197 MobiDBLite consensus disorder prediction 11 26 - -
Sed05g0530 197 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Sed05g0530 197 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0530 197 Pfam AP2 domain 42 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0530 197 SMART rav1_2 43 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0530 197 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0530 197 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677(InterPro)
Sed05g0530 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 195 IPR045277 GO:0003700(InterPro)
Sed05g0530 197 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0530 197 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0530 197 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0530 197 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0530 Sed-Chr5:3848451 Sed13g0173 Sed-Chr13:1119894 1.40E-58 dispersed
Sed01g3624 Sed-Chr1:65439806 Sed05g0530 Sed-Chr5:3848451 3.40E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38455 PF00847 AP2 2.10E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0530 - - - 0.0