Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0553 ATGGTTGTTCACATGCTTCCTATCCCTTCATCTTCTTCCATGGCTTCCATTCCCTTTCTCTCCTTCTCTTCCACTCTCAACCCTTCGCGCTTCCCCCATTCCTCTCTCTCGCCGCCGCTCCGCCGCTCCATTTCCGTCCCGCCGTTTCCGACGGCAACAGTTCCCAAGTGGTTTAGCCCTGCAACCATTACTTCCGCCTACGCCACCGGCCCTGCGTCGGACCCTAATATCGCCGGACCCGACCCGAACCCTGGCGGCGCCTCCGATTCCCGGGTTAGGGTTCTTGGGGCCCTGAATTGGGGGCTCTTGTGGACGCTTTTGACCAACCATCGCCTGCGCCTTCTGGCTTCTTCGCTTACGCTTGTTTGCTGCACCGCTTGCACTCTCTCCATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTGTAGGTGCAAAACCTGGGTCTTTGTGGAGGCTGCTGAGTACAGTTGGAATATTATATGCATTGGAGCCAATCTTGACGGTTCTGTTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTCGGGAGGTTGATGGTTCAGAAGGTGGAATTTTTTGACAGATATAAGGTTGGCGAAATTACCGGATTGTTGACTTCTGACTTGGGCTCTCTTAAGGATGTGGTGAGTGAGAATGTTTCGAGGGACCGTGGATTCAGAGCGTTCTCTGAGGTGATTGGAACAATATCCATACTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGTCTGCTGATGCTTAGTGTATCTTTTTCAGTGGCTGTATACAAGCGTTCAACTATTCCTGCATTTAAAGCTCATGGATTAGCTCAAGCATCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGTACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCACTTTTGGTCGCCAGGTTATTGCGTATGAGGGTAGTGGCATATCACTTGGGATTTTTAAATCTCTGAATGAATCTTTGACTAGAGTTGCTGTTTATATTTCGCTTATGATATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTCTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTAGTGAATACATTTGGAGATCTCCGTCGAACTTTTGCTTCTGTTGAAAGAATTAATTCTATTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTCAGATATAAGTTGTTATTCTCTGGCGAAAATGATGAAAACAGTCAAGTGAAAACACAGTTCATGGCAGCCCTAAAATCATCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGCGTTTTTCTTATCCTTTGAGACCTGACGTTGACGTTCTTAGTGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCACTAGTGGGCCCTAGTGGGGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAAAGCAAGGGCAGATAAAAGTTTCTGATGAAGATATTCGAGCATTTGATAAGAAAGAATGGACTCGAGCTGTTTCAATAGTGAACCAAGAACCTGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGACGATAACGTAACAAAGGATGAAGTGATAAAGGCAGCCAAAGCTGCAAACGCTCACGATTTCATCATTTCACTTCCTCAGGGTTACAACACGCCAGTTGGTGAACGCGGAGGCCTTTTAAGTGGTGGCCAGCGACAGAGAATTGCAATTGCAAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTAGATGAGGCGACCAGTGCACTCGATGCAATCAGTGAGCGACTGGTCCAGGACGCTCTAAGCCGTCTTATGAAGGGAAGGACGACTTTGGTGATCGCACATCGGTTGAGTACAGTTCAAAATGCTCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTGGAGCTGGGAACTCATTTGGAACTAGTGGCTCAGAAAGGTCGGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 2145 45.08 MVVHMLPIPSSSSMASIPFLSFSSTLNPSRFPHSSLSPPLRRSISVPPFPTATVPKWFSPATITSAYATGPASDPNIAGPDPNPGGASDSRVRVLGALNWGLLWTLLTNHRLRLLASSLTLVCCTACTLSMPFFSGRFFEVLVGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLMVQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTISILFALSPQLAPILGLLMLSVSFSVAVYKRSTIPAFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFTFGRQVIAYEGSGISLGIFKSLNESLTRVAVYISLMILYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFASVERINSILNEEVDEALAYGLEKEMQQKEFRYKLLFSGENDENSQVKTQFMAALKSSSNVINLAWSGDICLEDVRFSYPLRPDVDVLSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKQGQIKVSDEDIRAFDKKEWTRAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYNTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAISERLVQDALSRLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELVAQKGRYASLVGTQRLAFE 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4031839 4040608 - Sed0022360.1 Sed05g0553 713179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0553 714 SUPERFAMILY ABC transporter transmembrane region 103 415 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed05g0553 714 CDD ABC_MTABC3_MDL1_MDL2 470 709 - -
Sed05g0553 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 470 708 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0553 714 CDD ABC_6TM_TAP_ABCB8_10_like 119 406 - -
Sed05g0553 714 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 468 712 - -
Sed05g0553 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 709 IPR027417 -
Sed05g0553 714 Gene3D ABC transporter type 1, transmembrane domain 99 416 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed05g0553 714 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 398 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed05g0553 714 ProSitePatterns ABC transporters family signature. 611 625 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0553 714 SMART AAA_5 497 691 IPR003593 GO:0016887(InterPro)
Sed05g0553 714 Gene3D - 468 711 IPR027417 -
Sed05g0553 714 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 99 709 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Sed05g0553 714 Pfam ABC transporter 488 639 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0553 714 Pfam ABC transporter transmembrane region 116 385 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3650 Sed-Chr1:65682886 Sed05g0553 Sed-Chr5:4031839 2.60E-251 dispersed
Sed01g3651 Sed-Chr1:65682886 Sed05g0553 Sed-Chr5:4031839 6.80E-236 dispersed
Sed05g0553 Sed-Chr5:4031839 Sed05g0558 Sed-Chr5:4031839 0.00E+00 dispersed
Sed05g0553 Sed-Chr5:4031839 Sed05g0554 Sed-Chr5:4031839 1.90E-262 tandem
Sed14g0744 Sed-Chr14:7691170 Sed05g0553 Sed-Chr5:4031839 5.10E-13 transposed
Sed01g3647 Sed-Chr1:65682886 Sed05g0553 Sed-Chr5:4031839 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0553 K05657 - csv:101211598 1138.25