Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0556 ATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTCGGGAGGTTGATGGTTCAGAAGGTGGAATTTTTTGACAGATATAAGGTTGGCGAAATTACCGGATTGTTGACTTCTGACTTGGGCTCTCTTAAGGATGTGGTGAGTGAGAATGTTTCGAGGGACCGTGGATTCAGAGCGTTCTCTGAGGTGATTGGAACAATATCCATACTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGTCTGCTGATGCTTAGTGTATCTTTTTCAGTGGCTGTATACAAGCGTTCAACTATTCCTGCATTTAAAGCTCATGGATTAGCTCAAGCATCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGTACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCACTTTTGGTCGCCAGGTTATTGCGTATGAGGGTAGTGGCATATCACTTGGGATTTTTAAATCTCTGAATGAATCTTTGACTAGAGTTGCTGTTTATATTTCGCTTATGATATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTCTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTAGTGAATACATTTGGAGATCTCCGTCGAACTTTTGCTTCTGTTGAAAGAATTAATTCTATTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTCAGATATAAGTTGTTATTCTCTGGCGAAAATGATGAAAACAGTCAAGTGAAAACACAGTTCATGGCAGCCCTAAAATCATCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGCGTTTTTCTTATCCTTTGAGACCTGACGTTGACGTTCTTAGTGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCACTAGTGGGCCCTAGTGGGGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAAAGCAAGGGCAGATAAAAGTTTCTGATGAAGATATTCGAGCATTTGATAAGAAAGAATGGACTCGAGCTGTTTCAATAGTGAACCAAGAACCTGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGACGATAACGTAACAAAGGATGAAGTGATAAAGGCAGCCAAAGCTGCAAACGCTCACGATTTCATCATTTCACTTCCTCAGGGTTACAACACGCCAGTTGGTGAACGCGGAGGCCTTTTAAGTGGTGGCCAGCGACAGAGAATTGCAATTGCAAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTAGATGAGGCGACCAGTGCACTCGATGCAATCAGTGAGCGACTGGTCCAGGACGCTCTAAGCCGTCTTATGAAGGGAAGGACGACTTTGGTGATCGCACATCGGTTGAGTACAGTTCAAAATGCTCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTGGAGCTGGGAACTCATTTGGAACTAGTGGCTCAGAAAGGTCGGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 1623 41.84 MNFMWEKVMSRLRAQIFGRLMVQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTISILFALSPQLAPILGLLMLSVSFSVAVYKRSTIPAFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFTFGRQVIAYEGSGISLGIFKSLNESLTRVAVYISLMILYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFASVERINSILNEEVDEALAYGLEKEMQQKEFRYKLLFSGENDENSQVKTQFMAALKSSSNVINLAWSGDICLEDVRFSYPLRPDVDVLSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKQGQIKVSDEDIRAFDKKEWTRAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYNTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAISERLVQDALSRLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELVAQKGRYASLVGTQRLAFE 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4031839 4038735 - Sed0022360.4 Sed05g0556 713182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0556 540 Pfam ABC transporter transmembrane region 3 211 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed05g0556 540 ProSitePatterns ABC transporters family signature. 437 451 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0556 540 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 294 538 - -
Sed05g0556 540 Gene3D - 294 537 IPR027417 -
Sed05g0556 540 Pfam ABC transporter 314 465 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0556 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 535 IPR027417 -
Sed05g0556 540 Gene3D ABC transporter type 1, transmembrane domain 1 242 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed05g0556 540 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 535 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Sed05g0556 540 SMART AAA_5 323 517 IPR003593 GO:0016887(InterPro)
Sed05g0556 540 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 224 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed05g0556 540 CDD ABC_MTABC3_MDL1_MDL2 296 535 - -
Sed05g0556 540 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 296 534 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0556 540 SUPERFAMILY ABC transporter transmembrane region 2 241 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0556 Sed-Chr5:4031839 Sed05g0558 Sed-Chr5:4031839 4.30E-235 dispersed
Sed05g0555 Sed-Chr5:4031839 Sed05g0556 Sed-Chr5:4031839 1.70E-262 tandem
Sed05g0556 Sed-Chr5:4031839 Sed05g0557 Sed-Chr5:4031839 1.40E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0556 K05657 - csv:101211598 964.526