Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0557 ATGTTTCGAGGGACCGTGGATTCAGAGCGTTCTCTGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATCCATACTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGTCTGCTGATGCTTAGTGTATCTTTTTCAGTGGCTGTATACAAGCGTTCAACTATTCCTGCATTTAAAGCTCATGGATTAGCTCAAGCATCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGTACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCACTTTTGGTCGCCAGGTTATTGCGTATGAGGGTAGTGGCATATCACTTGGGATTTTTAAATCTCTGAATGAATCTTTGACTAGAGTTGCTGTTTATATTTCGCTTATGATATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTCTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTAGTGAATACATTTGGAGATCTCCGTCGAACTTTTGCTTCTGTTGAAAGAATTAATTCTATTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTCAGATATAAGTTGTTATTCTCTGGCGAAAATGATGAAAACAGTCAAGTGAAAACACAGTTCATGGCAGCCCTAAAATCATCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGCGTTTTTCTTATCCTTTGAGACCTGACGTTGACGTTCTTAGTGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCACTAGTGGGCCCTAGTGGGGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAAAGCAAGGGCAGATAAAAGTTTCTGATGAAGATATTCGAGCATTTGATAAGAAAGAATGGACTCGAGCTGTTTCAATAGTGAACCAAGAACCTGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGACGATAACGTAACAAAGGATGAAGTGATAAAGGCAGCCAAAGCTGCAAACGCTCACGATTTCATCATTTCACTTCCTCAGGGTTACAACACGCCAGTTGGTGAACGCGGAGGCCTTTTAAGTGGTGGCCAGCGACAGAGAATTGCAATTGCAAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTAGATGAGGCGACCAGTGCACTCGATGCAATCAGTGAGCGACTGGTCCAGGACGCTCTAAGCCGTCTTATGAAGGGAAGGACGACTTTGGTGATCGCACATCGGTTGAGTACAGTTCAAAATGCTCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTGGAGCTGGGAACTCATTTGGAACTAGTGGCTCAGAAAGGTCGGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 1488 41.87 MFRGTVDSERSLRQATLHQVQVIGTISILFALSPQLAPILGLLMLSVSFSVAVYKRSTIPAFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFTFGRQVIAYEGSGISLGIFKSLNESLTRVAVYISLMILYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFASVERINSILNEEVDEALAYGLEKEMQQKEFRYKLLFSGENDENSQVKTQFMAALKSSSNVINLAWSGDICLEDVRFSYPLRPDVDVLSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKQGQIKVSDEDIRAFDKKEWTRAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYNTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAISERLVQDALSRLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELVAQKGRYASLVGTQRLAFE 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4031839 4038735 - Sed0022360.5 Sed05g0557 713183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0557 495 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 249 493 - -
Sed05g0557 495 Gene3D - 249 492 IPR027417 -
Sed05g0557 495 Gene3D ABC transporter type 1, transmembrane domain 9 230 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed05g0557 495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 251 489 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0557 495 Pfam ABC transporter transmembrane region 12 166 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed05g0557 495 SUPERFAMILY ABC transporter transmembrane region 12 196 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed05g0557 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 490 IPR027417 -
Sed05g0557 495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 179 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed05g0557 495 SMART AAA_5 278 472 IPR003593 GO:0016887(InterPro)
Sed05g0557 495 Pfam ABC transporter 269 420 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0557 495 CDD ABC_MTABC3_MDL1_MDL2 251 490 - -
Sed05g0557 495 ProSitePatterns ABC transporters family signature. 392 406 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g0557 495 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 20 490 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0554 Sed-Chr5:4031839 Sed05g0557 Sed-Chr5:4031839 3.30E-274 dispersed
Sed05g0555 Sed-Chr5:4031839 Sed05g0557 Sed-Chr5:4031839 3.30E-274 dispersed
Sed05g0557 Sed-Chr5:4031839 Sed08g2129 Sed-Chr8:35257851 1.00E-73 dispersed
Sed05g0556 Sed-Chr5:4031839 Sed05g0557 Sed-Chr5:4031839 1.40E-262 tandem
Sed05g0557 Sed-Chr5:4031839 Sed05g0558 Sed-Chr5:4031839 5.60E-197 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0557 K05657 - csv:101211598 838.95