Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0561 | ATGGTGAGAGGGAAAGTTGAAATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACGTTTTCAAAGAGAAGAAATGGATTGTTGAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTCAAGTTTCTGTCATCATTTTTTCTCAAAAAGGAAAGCTCTTTGAATTTTCCAGTTCTGACATGCAAAGAACAATCGAACGTTATCGCAAATATGGAAAGGATGGACAGACCGCTTTTCGCTCCGAAGGATACATGCTGCAAATGAAGCAAGAAGCTGACATGGCGGCAAAGAAAATTGAGCAACTTGAAAGTTCACAGCAGAAGCTTCTCGGACGTGGACTTGATCGTTGTTCCTTGGAGGAGATTCGAGCGATTGAAGCACAGTTGGTACTTAGCTTAACTCGTATTAGAGAAACAAAGTCTCAACTATTCGAGGAGCAGAAAAAGAAGCTAATAGAAAAGGGGAAACTCCTTGTAGAGGAAAATGTGAAGTTATCTGCTAAGTGTGGTACTAAGCCATGGGAACCAGAAGGTGGTAAAGATGATGGAGGCATTATGAGTTTATGCAGCCATAGTAGCCAAGGCTCTGATGTGCAAACTGAATTCTTCATTGGATTGCCTAGCTCATAA | 633 | 40.44 | MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAQVSVIIFSQKGKLFEFSSSDMQRTIERYRKYGKDGQTAFRSEGYMLQMKQEADMAAKKIEQLESSQQKLLGRGLDRCSLEEIRAIEAQLVLSLTRIRETKSQLFEEQKKKLIEKGKLLVEENVKLSAKCGTKPWEPEGGKDDGGIMSLCSHSSQGSDVQTEFFIGLPSS | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4054355 | 4066273 | + | Sed0009958.1 | Sed05g0561 | 713187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0561 | 210 | Coils | Coil | 86 | 106 | - | - | |
Sed05g0561 | 210 | SUPERFAMILY | SRF-like | 3 | 79 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 190 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed05g0561 | 210 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | FunFam | MADS-box transcription factor MADS-MC | 13 | 84 | - | - | |
Sed05g0561 | 210 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed05g0561 | 210 | MobiDBLite | consensus disorder prediction | 172 | 195 | - | - | |
Sed05g0561 | 210 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | Pfam | K-box region | 88 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed05g0561 | 210 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed05g0561 | 210 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed05g0561 | 210 | Gene3D | - | 13 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3655 | Sed-Chr1:65730428 | Sed05g0561 | Sed-Chr5:4054355 | 2.40E-58 | dispersed | |
Sed05g0561 | Sed-Chr5:4054355 | Sed13g0184 | Sed-Chr13:1200419 | 7.20E-45 | dispersed | |
Sed05g0561 | Sed-Chr5:4054355 | Sed05g0562 | Sed-Chr5:4054355 | 1.70E-110 | tandem | |
Sed01g3654 | Sed-Chr1:65730428 | Sed05g0561 | Sed-Chr5:4054355 | 4.20E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38456 | PF01486 | K-box | 1.60E-17 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0561 | - | - | - | 0.0 |