Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0561 ATGGTGAGAGGGAAAGTTGAAATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACGTTTTCAAAGAGAAGAAATGGATTGTTGAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTCAAGTTTCTGTCATCATTTTTTCTCAAAAAGGAAAGCTCTTTGAATTTTCCAGTTCTGACATGCAAAGAACAATCGAACGTTATCGCAAATATGGAAAGGATGGACAGACCGCTTTTCGCTCCGAAGGATACATGCTGCAAATGAAGCAAGAAGCTGACATGGCGGCAAAGAAAATTGAGCAACTTGAAAGTTCACAGCAGAAGCTTCTCGGACGTGGACTTGATCGTTGTTCCTTGGAGGAGATTCGAGCGATTGAAGCACAGTTGGTACTTAGCTTAACTCGTATTAGAGAAACAAAGTCTCAACTATTCGAGGAGCAGAAAAAGAAGCTAATAGAAAAGGGGAAACTCCTTGTAGAGGAAAATGTGAAGTTATCTGCTAAGTGTGGTACTAAGCCATGGGAACCAGAAGGTGGTAAAGATGATGGAGGCATTATGAGTTTATGCAGCCATAGTAGCCAAGGCTCTGATGTGCAAACTGAATTCTTCATTGGATTGCCTAGCTCATAA 633 40.44 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAQVSVIIFSQKGKLFEFSSSDMQRTIERYRKYGKDGQTAFRSEGYMLQMKQEADMAAKKIEQLESSQQKLLGRGLDRCSLEEIRAIEAQLVLSLTRIRETKSQLFEEQKKKLIEKGKLLVEENVKLSAKCGTKPWEPEGGKDDGGIMSLCSHSSQGSDVQTEFFIGLPSS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4054355 4066273 + Sed0009958.1 Sed05g0561 713187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0561 210 Coils Coil 86 106 - -
Sed05g0561 210 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g0561 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Sed05g0561 210 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g0561 210 MobiDBLite consensus disorder prediction 172 195 - -
Sed05g0561 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 Pfam K-box region 88 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g0561 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0561 210 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed05g0561 210 Gene3D - 13 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3655 Sed-Chr1:65730428 Sed05g0561 Sed-Chr5:4054355 2.40E-58 dispersed
Sed05g0561 Sed-Chr5:4054355 Sed13g0184 Sed-Chr13:1200419 7.20E-45 dispersed
Sed05g0561 Sed-Chr5:4054355 Sed05g0562 Sed-Chr5:4054355 1.70E-110 tandem
Sed01g3654 Sed-Chr1:65730428 Sed05g0561 Sed-Chr5:4054355 4.20E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38456 PF01486 K-box 1.60E-17 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0561 - - - 0.0