Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0572 ATGCCCTTATTCCTTCAATGTTCATCAAATCCGGTCGCCGGAAAAAAAACCCTCCGCTCCGATTCCTCCATGTCCGATCATGATCCCTCCCCCTCCGCCGCCAAGCTCCGCAAGATTCCCCCTATTCCAGTTCGCCGCCTCGATTCCAAACCCGACGATTCCGATCATGAACATGACGACGACGACGACGCTCACGATCGCCCTTATCAGCCCGACGATTCCTTCATTCTCATGGCATCCTCCCTCGGCTTGAACCACATTCGGACTCGCTCTTCTTCTCTGCCAGTTCGCACTTCCGCCGTTGGTACGCCCTCTCATTTGGGCGATACTTCCAGGAACAATGTCGCCCAACCCGGCATCAACCGCATCGATTCCGACCCCAAACTTCATTCCCCTGAAAAAGGGAAGAGAGTTCTGTGGAGTCAATCGAAATCGTTTAGGTGTCCGCCGACTGTGAATCATGATTTTGAGGGTAATCAACCGTCGTATTCGAAGGAAATTCACTCTCCGCGATTCCGAGCTATCCTGCGTGTTACTAGTGGAAGATACAAGAGAACCCCTGATGTCAAAAGCTTCTCTCATGAGCTTAATTCCAAAGGAGTTCGCCCCTTTCCTATTTGGAAGCCTCGGGCATTTGGACATTTGGAAGAGATCATGGTGGATATCAGGGCAAAATTCGACAGATTGAAGAACGACGTTAATTACGAATTGGGCATTTTTGCTGGAGATCTTGTAGATATACATGAAAAGACAGACCAGTCTATGGCTGAACTTAAAGAGGGTTTGGAGGATTTATTGGTGGTTGCAAGGAAATGTGCAACAATGTCACCTACTGAATTCTGGAAGAAAGGTGAAGGGATTGTTCAGAATCTAGACGACCGGCGCCAGGAGCTGTCATTAGGAATTCTTAAGCAATCACACACCCGCCTTCTTTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAGCACATTTTGGGTCTTCATCAACTTAGTGATCTAGGAATTTATTCACAGAAAATTAAGGAGCTGGAACAACTGGACTTTGGCGATACGTTGTCTGGGAAAGAAGATATTGAGAAGCAGCTGAAGTTAAGTGGGAAGGATCAAGCCGGTCGCATTATGAAGCAAGATTTAGATAAAAGTTCTAGTAATAGTGCTGGAAATGTTGATCTGGACTCTGCCGCAAGTATTGCTTCATCTACAAGCATGTATAGGATGTCATCCTGGAAAAAACTACCATCAGCAGCTGCAAAGAAGCGGAAAGACTCTGACTCTGTCGATACAACACCTCACAAGGATAAGCTTGAACAGTTGCATAAACATGAAGCTAAAACTACGAGCAATAACCAATTAGATACACCATCTAGTCATATTGAGCATTCAGAAGCACCTCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTATCATCAAAATGCCACTTTTGAAAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCAACTATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGTGGATAGGTGTGATTTGAAAGGTTTAACTGTGAACGAGCGCCTTGAACGGGTTGCTAGAGCTATTGAAAAGATACTCGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTAGCGAAACTTCCCGTGGGAATTTTGATACCGTTAAGGTTTCTTCATTAAGTATGCATGAAGAGTTTTTTGACTTGTCATCTAAAGGAATTAGTTCGTCATATCCAAATTCTGAAGATTTGCTTGGTTCTCTCCCTGCAACTGGAAACTCTTCCTTCGTGGAAAGTCCGGATATTTTTCCCGATCCATCATACAACCGACCATTTATTTTCACACCAGATCACAGTGCAAAATCAACGTCAGCTGGAACTCTAACACCAAGATCGCCTCTTTTAACACCCAGATCAAGCCAGATTGAGTTGTTGTTGAATGGGCGAAGAGCAATATCTGAACTTGAAAACTATCAGCAGATATTCAAATTGTTGGATATTGTTCGTTTCATTGCAAGCGTTAACAACTCTGACTATGGTGCACTGGAGTCTATGCTTGATCGATTAGAAGACCTTAAATATGCAATCCAGGACAGGAAGGTGGATGCTCTTGTTGTGGAAACTTTTGGAAGGCGCATAGAAAAGCTCTTGCAGGAAAAATATGTTCAACTTTGTGGGCAAATAGAAGATGATAAAGTAGACCCTTCAAATGGCATGGTAGATGAAGAGAGTTCAGTGGAAGATGATAGTGTTCGTAGTTTACGTGCAAGTCCTGTTAACCCATGTTCAAAAGATCGAACATCCATTGAAGATTTTGAAATAATCAAACCAATTAGTAGAGGAGCATATGGCCGAGTTTTCCTTGCCAAAAAAAGAGCAACTGGAGACTTATTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAAAATGCAGTTGAAAGCATTTTGGCTGAACGTAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATTTGGTCATGGAATACTTAAATGGTGGTGATATTTACTCCTTACTGAGAAACTTAGGGTGCTTAGATGAAGATATGGCTCGAATTTATATTGCTGAAATTGTTCTTGCTTTGGAGTACTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCATATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCTGTGGAACTGCTTCACTTGGAGACCAATCTTCAAAAACAGAAAACAGACAAAAGCATGCAGTTGTTGGCACTCCAGATTATTTGGCGCCTGAAATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGGCTACCGCCATTCAATGCCGAATGTCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCATGGCCCAAGGTACCGGATGAGATGAGTTATGAAGCCCATGATCTTATTGACAAATTGCTGACTGAAAATGCAGTTCAAAGACTGGGAGCTACAGGAGCCAGAGAGGTGAAGCAACATCCTTTCTTCAAGGATATTAACTGGGAAACACTTGCAAGGCAGAAGGCAATGTTTATACCATCAGCAGAGGCGCTCGATACAAGTTATTTCATGTGTCGTTCTATGTGGAATCCAGAAGATGCGGATTTGCATGGTGGAAGTGACATTGATGATCATTATTTGACAGATACTTGCAGTAGTAGTTCATTTAGCAACCCACAAGACGAAGATGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACATCAGCCCTTACTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAGTTGGCTTCCATGAATTATGATTTGGTAGTGAAGAGCAATCAAAACTCACCAGATGTATCAAAACCATCCATTCCATGA 3573 42.29 MPLFLQCSSNPVAGKKTLRSDSSMSDHDPSPSAAKLRKIPPIPVRRLDSKPDDSDHEHDDDDDAHDRPYQPDDSFILMASSLGLNHIRTRSSSLPVRTSAVGTPSHLGDTSRNNVAQPGINRIDSDPKLHSPEKGKRVLWSQSKSFRCPPTVNHDFEGNQPSYSKEIHSPRFRAILRVTSGRYKRTPDVKSFSHELNSKGVRPFPIWKPRAFGHLEEIMVDIRAKFDRLKNDVNYELGIFAGDLVDIHEKTDQSMAELKEGLEDLLVVARKCATMSPTEFWKKGEGIVQNLDDRRQELSLGILKQSHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYSQKIKELEQLDFGDTLSGKEDIEKQLKLSGKDQAGRIMKQDLDKSSSNSAGNVDLDSAASIASSTSMYRMSSWKKLPSAAAKKRKDSDSVDTTPHKDKLEQLHKHEAKTTSNNQLDTPSSHIEHSEAPPKEQKVSWGIWGYHQNATFENLMICRICEVEIPTIHVEEHSRICTIVDRCDLKGLTVNERLERVARAIEKILESWTPKSTPRSSETSRGNFDTVKVSSLSMHEEFFDLSSKGISSSYPNSEDLLGSLPATGNSSFVESPDIFPDPSYNRPFIFTPDHSAKSTSAGTLTPRSPLLTPRSSQIELLLNGRRAISELENYQQIFKLLDIVRFIASVNNSDYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVQLCGQIEDDKVDPSNGMVDEESSVEDDSVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLAKKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSICGTASLGDQSSKTENRQKHAVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGLPPFNAECPQQIFDNIINRDIPWPKVPDEMSYEAHDLIDKLLTENAVQRLGATGAREVKQHPFFKDINWETLARQKAMFIPSAEALDTSYFMCRSMWNPEDADLHGGSDIDDHYLTDTCSSSSFSNPQDEDGDECGSLADFCTSALTVKYSFSNFSFKNLSQLASMNYDLVVKSNQNSPDVSKPSIP 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4171466 4187242 - Sed0002095.1 Sed05g0572 713198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0572 1190 FunFam Probable serine/threonine protein kinase IREH1 869 1085 - -
Sed05g0572 1190 ProSiteProfiles Protein kinase domain profile. 785 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0572 1190 Gene3D Phosphorylase Kinase; domain 1 783 1094 - -
Sed05g0572 1190 PANTHER SERINE/THREONINE-PROTEIN KINASE 493 1162 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed05g0572 1190 MobiDBLite consensus disorder prediction 425 475 - -
Sed05g0572 1190 MobiDBLite consensus disorder prediction 41 70 - -
Sed05g0572 1190 SMART serkin_6 785 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0572 1190 FunFam probable serine/threonine protein kinase IREH1 783 872 - -
Sed05g0572 1190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0572 1190 MobiDBLite consensus disorder prediction 425 456 - -
Sed05g0572 1190 MobiDBLite consensus disorder prediction 93 133 - -
Sed05g0572 1190 CDD STKc_MAST_like 791 1072 - -
Sed05g0572 1190 ProSiteProfiles AGC-kinase C-terminal domain profile. 1068 1170 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0572 1190 MobiDBLite consensus disorder prediction 93 120 - -
Sed05g0572 1190 Pfam Protein kinase domain 786 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0572 1190 MobiDBLite consensus disorder prediction 10 29 - -
Sed05g0572 1190 SUPERFAMILY Protein kinase-like (PK-like) 782 1094 IPR011009 -
Sed05g0572 1190 Gene3D Transferase(Phosphotransferase) domain 1 869 1085 - -
Sed05g0572 1190 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3667 Sed-Chr1:65840884 Sed05g0572 Sed-Chr5:4171466 0.00E+00 dispersed
Sed05g0572 Sed-Chr5:4171466 Sed08g1996 Sed-Chr8:34316100 1.30E-303 dispersed
Sed14g1270 Sed-Chr14:21747693 Sed05g0572 Sed-Chr5:4171466 1.30E-43 dispersed
Sed14g1271 Sed-Chr14:21747693 Sed05g0572 Sed-Chr5:4171466 1.30E-43 dispersed
Sed01g3666 Sed-Chr1:65839661 Sed05g0572 Sed-Chr5:4171466 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79123 PF00069 Pkinase 1.20E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0572 K08789 - csv:101210442 1896.32