Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0581 | ATGGATTCTAGACCTGAAAATGCAAGCTCGGAAGGCGAGTCGCCGCCTCCGCCGATGCCAGCTGCGAGTTCTCCGCCACTGGCGGGAACCGTTGGAATTAAGAAAAGAGGCAGGCCGAGAAAGTACGACTGGCATGGAAATATAGTGCCGACATTGTCGCCAATGCCGATTTCGTCGTCGATTCCACTGGCCCGGGGATGGAAGGGGGGAAGAGGACGGTCTGTAGAGTCGATCAAGAAGTGGAGGAACTATGAACGTGAGATTCCAGGTAACCCGGTTTCCCTTTTTGCTGGAGCGGATTTCACACCTCACGTGATTACTGTTAATATTGGTGAGGATGTTAACTTGAAAATCATTTCATTTTCCCAACAAGGATCTCGGGCAATTTGTATACTCTCTGCTAATGGTGAGATCTCGAATGTTACACTTCGGCAGTCAACATCATCTTGGGGCACTGTAACATACGAGGGTCGATTTGAGATACTTTCTCTGTCTGGATTATATATGGCTTCTGAAATTGGTGGGACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGTGGAGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTTCTACCACCAGATCACCAGCAGGAAAATAAACCAAAAAATAGCAGGATGGAACCTACATCAAATGCAGTTTCACCTCCTCCAGTCAATGAAAAGTCACCTTTTCCAGAAGAAACATAA | 765 | 49.02 | MDSRPENASSEGESPPPPMPAASSPPLAGTVGIKKRGRPRKYDWHGNIVPTLSPMPISSSIPLARGWKGGRGRSVESIKKWRNYEREIPGNPVSLFAGADFTPHVITVNIGEDVNLKIISFSQQGSRAICILSANGEISNVTLRQSTSSWGTVTYEGRFEILSLSGLYMASEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPDHQQENKPKNSRMEPTSNAVSPPPVNEKSPFPEET | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4236847 | 4242823 | - | Sed0006928.2 | Sed05g0581 | 713207 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0581 | 254 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 103 | 216 | IPR005175 | - | |
Sed05g0581 | 254 | CDD | DUF296 | 102 | 216 | IPR005175 | - | |
Sed05g0581 | 254 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 23 | 236 | IPR039605 | GO:0003680(InterPro) | |
Sed05g0581 | 254 | FunFam | AT-hook motif nuclear-localized protein 1-like | 103 | 234 | - | - | |
Sed05g0581 | 254 | ProSiteProfiles | PPC domain profile profile. | 98 | 237 | IPR005175 | - | |
Sed05g0581 | 254 | Gene3D | - | 103 | 233 | - | - | |
Sed05g0581 | 254 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Sed05g0581 | 254 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 100 | 230 | - | - | |
Sed05g0581 | 254 | MobiDBLite | consensus disorder prediction | 217 | 254 | - | - | |
Sed05g0581 | 254 | MobiDBLite | consensus disorder prediction | 229 | 243 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3683 | Sed-Chr1:65961070 | Sed05g0581 | Sed-Chr5:4236847 | 1.00E-98 | dispersed | |
Sed05g0581 | Sed-Chr5:4236847 | Sed07g1100 | Sed-Chr7:8068997 | 2.20E-64 | dispersed | |
Sed05g0580 | Sed-Chr5:4236847 | Sed05g0581 | Sed-Chr5:4236847 | 7.60E-142 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0581 | - | - | - | 0.0 |