Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0581 ATGGATTCTAGACCTGAAAATGCAAGCTCGGAAGGCGAGTCGCCGCCTCCGCCGATGCCAGCTGCGAGTTCTCCGCCACTGGCGGGAACCGTTGGAATTAAGAAAAGAGGCAGGCCGAGAAAGTACGACTGGCATGGAAATATAGTGCCGACATTGTCGCCAATGCCGATTTCGTCGTCGATTCCACTGGCCCGGGGATGGAAGGGGGGAAGAGGACGGTCTGTAGAGTCGATCAAGAAGTGGAGGAACTATGAACGTGAGATTCCAGGTAACCCGGTTTCCCTTTTTGCTGGAGCGGATTTCACACCTCACGTGATTACTGTTAATATTGGTGAGGATGTTAACTTGAAAATCATTTCATTTTCCCAACAAGGATCTCGGGCAATTTGTATACTCTCTGCTAATGGTGAGATCTCGAATGTTACACTTCGGCAGTCAACATCATCTTGGGGCACTGTAACATACGAGGGTCGATTTGAGATACTTTCTCTGTCTGGATTATATATGGCTTCTGAAATTGGTGGGACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGTGGAGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTTCTACCACCAGATCACCAGCAGGAAAATAAACCAAAAAATAGCAGGATGGAACCTACATCAAATGCAGTTTCACCTCCTCCAGTCAATGAAAAGTCACCTTTTCCAGAAGAAACATAA 765 49.02 MDSRPENASSEGESPPPPMPAASSPPLAGTVGIKKRGRPRKYDWHGNIVPTLSPMPISSSIPLARGWKGGRGRSVESIKKWRNYEREIPGNPVSLFAGADFTPHVITVNIGEDVNLKIISFSQQGSRAICILSANGEISNVTLRQSTSSWGTVTYEGRFEILSLSGLYMASEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPDHQQENKPKNSRMEPTSNAVSPPPVNEKSPFPEET 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4236847 4242823 - Sed0006928.2 Sed05g0581 713207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0581 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 216 IPR005175 -
Sed05g0581 254 CDD DUF296 102 216 IPR005175 -
Sed05g0581 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 23 236 IPR039605 GO:0003680(InterPro)
Sed05g0581 254 FunFam AT-hook motif nuclear-localized protein 1-like 103 234 - -
Sed05g0581 254 ProSiteProfiles PPC domain profile profile. 98 237 IPR005175 -
Sed05g0581 254 Gene3D - 103 233 - -
Sed05g0581 254 MobiDBLite consensus disorder prediction 1 45 - -
Sed05g0581 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 230 - -
Sed05g0581 254 MobiDBLite consensus disorder prediction 217 254 - -
Sed05g0581 254 MobiDBLite consensus disorder prediction 229 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3683 Sed-Chr1:65961070 Sed05g0581 Sed-Chr5:4236847 1.00E-98 dispersed
Sed05g0581 Sed-Chr5:4236847 Sed07g1100 Sed-Chr7:8068997 2.20E-64 dispersed
Sed05g0580 Sed-Chr5:4236847 Sed05g0581 Sed-Chr5:4236847 7.60E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0581 - - - 0.0