Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0587 ATGGCCCCTACTTCCCTTGCTTCCCGCTTCCAACAATCCGTCACCCCGACCGCCCTCCGATCCTATGCCGCCGAGTTCATCTCTACCTTCTTCTACGTCTTCTCCGTCGTCGGAGCATCCATGGCGTCTCAGAAGTTGATGCCCGGTGTGGCTGAAACAGACCTATTGAGTCTTCTGGTGGCCGCTGTGGCCAATGCCTTTGCTTTAGCCTCCGCCATTTACATTGCTGCTAACATCTCGGGCGGACATGTCAACCCGGCGGTGACGTTCGGGATGGCGGTTGGCGGCCATGTCAGTGTTCCCACTGCTCTCTTCTACTGGTTTGCTCAAATGCTTGCCTCTGTTATGGCCTGCATTGTTCTAAGAGCCACCATTGTTGGACAGCATGTTCCAAGCTATGCCATTGCTGAGGAGATGACTGGCTTCGGAGCATCAGTAGTGGAAGGCATATTGACATTTTCCTTAGTGTATACCGTTTTCGCTGCTAGCGACTCGAGAAGAGGTCCGTGCAATGCGATCGGCGCGGTGATGGTCGGGCTGATTGCCGGAGCCAATGTACTGGCTGCCGGGCCGTTCTCCGGTGGGTCGGTGAACCCGGCGTGCGCGTTCGGGGTGGCGATTGTTGCCGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCACTGATTGGGGCGGCTCTTGCTGGAATTGTTCATGATAATGTGGTTTTTCCTGCTGAGAATGTAGATTCATTCAGAGGGGTTCCTGAAGCTGTTGTTGTGTAA 768 54.95 MAPTSLASRFQQSVTPTALRSYAAEFISTFFYVFSVVGASMASQKLMPGVAETDLLSLLVAAVANAFALASAIYIAANISGGHVNPAVTFGMAVGGHVSVPTALFYWFAQMLASVMACIVLRATIVGQHVPSYAIAEEMTGFGASVVEGILTFSLVYTVFAASDSRRGPCNAIGAVMVGLIAGANVLAAGPFSGGSVNPACAFGVAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVVV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4291848 4293553 - Sed0001288.1 Sed05g0587 713213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0587 255 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0587 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0587 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0587 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0587 255 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0587 255 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0587 255 Gene3D Glycerol uptake facilitator protein. 5 246 IPR023271 -
Sed05g0587 255 Pfam Major intrinsic protein 15 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0587 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Sed05g0587 255 FunFam Probable aquaporin TIP5-1 4 245 - -
Sed05g0587 255 PANTHER AQUAPORIN-8 10 239 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed05g0587 255 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0587 Sed-Chr5:4291848 Sed09g1598 Sed-Chr9:39474023 2.10E-51 dispersed
Sed05g0587 Sed-Chr5:4291848 Sed03g2041 Sed-Chr3:14307620 2.10E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0587 K09873 - csv:101214078 433.335