Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0603 ATGGCTTTCTACAAACCATTAGCCTATATTCTCCTCACCATCACCCTGATGGTTGTCGGCCCTACAGCAGCGCAGCTGAGCCCGACGTTCTACGATGCTACATGCCCGAACTTGCCCTCCATTGTGGAGGATGTAATGAGACAAGCTCTACAAACCGACGCTCGAGCAGGCGCAAAACTCATTCGTTTCCACTTCCACGACTGCTTTGTCAATGGATGTGATGGATCGGTTCTACTACGAAATTCAACCGCAGACGGTATAATAAGCGAGCTAGACGCACCGGGAAACCGAGGAATACAAGGTGAAGATATCGTTAATAACATCAAGACCGCAGTCGAAAATGCTTGCCCAAACCTTGTGTCTTGTGCTGACATCTTGGCCATTGCGTCTAATGTAGGCGTCGTCTTGGCAGGAGGAAGGGGTTGGGAGGTACAGTTGGGAAGAAGAGACAGCAGAAATGCAAGCAGATCTGTAGCAGAAAGTAACCTTCCAAGTCCCTTTGAACCTCTTCAAAATCTTACAGTCAAGTTTGCCAATGTTGGTCTTGATTCCACTGATCTTGTTGCTTTATCCGGAGCACACACGTTTGGGCGTTCAAGGTGTTTATTCTTCAGCGGGCGATTAACCGACTTCAACCAAACGGGAATGCCCGACCCGACGCTAGACCCGACCTACAGAGAAATCCTGATCCAGACCTGCCAACCCGGATCCGAAACCCGGGCGAATCTGGACCCGACAACGCCAGACGAATTCGACAACAACTACTTCACAAACCTGCAGGGGAACCGCGGGCTTCTAACGAGCGACCAGGTGCTATTCTCAACCGACCAGGCTGTGACCATTGACATCGTGAACCGCTTCGCTGCGAACCCAGATGAGTTCTCGGCGGCGTTTGGAGCGTCCATGATCAAGATGGGGAATATCAGCCCCTTGACTGGAACTGATGGCGAAATTCGACTCACCTGCTCTGCTGTTAATCCTCCTTTGCCTGCTTTTGCTGATATGTAA 1008 50.69 MAFYKPLAYILLTITLMVVGPTAAQLSPTFYDATCPNLPSIVEDVMRQALQTDARAGAKLIRFHFHDCFVNGCDGSVLLRNSTADGIISELDAPGNRGIQGEDIVNNIKTAVENACPNLVSCADILAIASNVGVVLAGGRGWEVQLGRRDSRNASRSVAESNLPSPFEPLQNLTVKFANVGLDSTDLVALSGAHTFGRSRCLFFSGRLTDFNQTGMPDPTLDPTYREILIQTCQPGSETRANLDPTTPDEFDNNYFTNLQGNRGLLTSDQVLFSTDQAVTIDIVNRFAANPDEFSAAFGASMIKMGNISPLTGTDGEIRLTCSAVNPPLPAFADM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4379712 4383041 - Sed0002553.1 Sed05g0603 713229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0603 335 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 CDD secretory_peroxidase 25 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g0603 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed05g0603 335 SUPERFAMILY Heme-dependent peroxidases 25 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 ProSiteProfiles Plant heme peroxidase family profile. 25 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 Gene3D Peroxidase, domain 2 164 305 - -
Sed05g0603 335 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 PANTHER PEROXIDASE 72-RELATED 15 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0603 335 FunFam Peroxidase 164 305 - -
Sed05g0603 335 Gene3D - 30 326 - -
Sed05g0603 335 Pfam Peroxidase 42 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0603 Sed-Chr5:4379712 Sed05g1089 Sed-Chr5:10037705 7.50E-105 dispersed
Sed05g0603 Sed-Chr5:4379712 Sed01g3340 Sed-Chr1:62162697 2.00E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0603 K00430 - csv:101215530 497.664