Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0621 ATGGAGGGGATGGAAGATGAAGCTGATAAAAATCTTATGTTGCTGCCTTCCACTTCTCCAGTTGTAGCAGTTGCTATCAATGGGAAGAAAAACAGTAAATATATAATTAAGTGGTCATTGGAAAAATTTCTACCAGAGGGTATCATCAATTTCAAGTTGCTACACATCACCCCAAGGATTACTAGTGTCCCAACTCCAAATTGTGTATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAATTCAGTTCCAATTTCAAAAGTTCGTGACGATGTTGCTGCAGCTTATAGGTCAGAAATTGGGTGGCAAACGAGTGAAAAGCTTCTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTAACTCTTGAATCAGATGATGTAGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAACTTGTTATAGGAGTTTCATCACAGGGGTTTTTCTCTAGGAAACTAAACGGTATATCATCAAGAATATCAGCCCTTGCACCTAGATATTGTACAGTCTATGCTATTTCAAAAGGAAAATTAGCCTCAATACAACCGCCTGATATGAAGACATGCGTGAGCATTAAAGATGATTCGAGTGAAGCGAGTTCTGCAAATAGTTACACAAGCTATTCTTCTAGCTCACTTACAGATGGCAGTTCAAGCTTAATTACATCCTACTCTAGTTTACCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTGCAAGGAAAACTCGCCCAATTATAGCCGACCATTCTAGGTGTCATTCCGTTGATATCGAGGAGCAGGTAGATGGGGTTCGATCTTCTTCCTACGTTTCGGATTGTGCAGAAACATTGAGTCTGGCCTCTAGTGGTAAAAGCTCGCCATCAGAAAACGAAACTTGGGTTTCTGTTGAAGCTTCATCCTCAGGCTCAATCAATGATTATTCTTCATGTAGAAGTCAGGTGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCAAGGGGACTGTATGCAATTGCTCAACAAGAGACGATCGATGCCTCTCGAAAGCTGAGCCATCTAAACAAACTACGATCAGAGGAAGCCAGGAAGCTCGAAGAGATCAATAACAAAGAGGTAGCCGCCAAAGAATCTGCAAGGGAAGAGAGAGCAAGGCTTGAAGCTTTGAGAAGCGAAGCAAAGTATGTTAAAGAGCGTGCCGAAAGAGAAGGCGTGTACAGGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAGCAATACCAACATTTCCAGTGGGAAGATATTGTTTCTGCCACATCATGTTTTTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGTACAGTTTATAAGTGCAATTTGCATCATACAACTGTAGCAGTGAAAGTCCTTCACTCTAGAGATGGTCACAAACAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCATCCCCATCTACTTCTACTACTCGGTGCATGTCCCGAAAAGAATTGCCTGGTTTACGAGCACATGGAAAATGGTAGCTTGGAGGATAGGTTGCACTGCAGAGGTAATACACCTGCAATCCCATGGTATGAGAGGTACAGAATTGCTTGGGAAATAGCTTCTGCTCTTGTTTTTCTTCACAGCTCAAAGCCAAAACCAATAATCCACCGCGATCTTAAGCCAGCAAACATTTTACTTGACCAGAACCTCGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTCGATTCAGATCCTTTAATGTCAACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATGGATCCCGAGTATCAAAGAACGGGATTACTCTCTCCTAAGTCTGATGTATATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAATCAGCAGTAGCATTAACCCATGTGGTAGAAACAGCCATTGATAACAACACTTTAATAAGAGTTCTTGATATAGAGGCTGGGCATTGGCCCGTCGAAGAGACGTATGAATTGGCGAGATTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCCAACTTAAAGGATCAAGTACTTCCCTTGTTGCTGATACTGAAAAAGGTTGCAGACGAGGCTCGCAATTTGCTCTCTCGAGTTCCAGCTGCAATTCCTAATCATTTCATATGTCCAATTCTTCAGGATGTGATGAATGATCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATCGAGAAGTGGCTTCAAGAGAACGATATCTCACCGATGACGAAGTTGCCACTGTCAGATAAGAACTTAATACCAAATTATAGTCTTCTCCCTGCCATTGTTGAATGGAACTCCAGAAAAAACTAA 2466 42.17 MEGMEDEADKNLMLLPSTSPVVAVAINGKKNSKYIIKWSLEKFLPEGIINFKLLHITPRITSVPTPNCVFKLYANVDAVGNSVPISKVRDDVAAAYRSEIGWQTSEKLLPYKKMFAQRKVQLDVVTLESDDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGISSRISALAPRYCTVYAISKGKLASIQPPDMKTCVSIKDDSSEASSANSYTSYSSSSLTDGSSSLITSYSSLPSPSPSLPLQRFQALSTINQSLLARKTRPIIADHSRCHSVDIEEQVDGVRSSSYVSDCAETLSLASSGKSSPSENETWVSVEASSSGSINDYSSCRSQVDVNFELEKLRIELRHARGLYAIAQQETIDASRKLSHLNKLRSEEARKLEEINNKEVAAKESAREERARLEALRSEAKYVKERAEREGVYRKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSCFSEDLKIGMGAHGTVYKCNLHHTTVAVKVLHSRDGHKQMQFLQELEILSKIHHPHLLLLLGACPEKNCLVYEHMENGSLEDRLHCRGNTPAIPWYERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFDSDPLMSTAFKDSGPVGTLCYMDPEYQRTGLLSPKSDVYAFGMVILQLLTAKSAVALTHVVETAIDNNTLIRVLDIEAGHWPVEETYELARLGLRCAELQRKDRPNLKDQVLPLLLILKKVADEARNLLSRVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEKWLQENDISPMTKLPLSDKNLIPNYSLLPAIVEWNSRKN 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4475665 4485495 - Sed0009242.1 Sed05g0621 713247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0621 821 ProSiteProfiles U-box domain profile. 750 821 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0621 821 SMART serkin_6 468 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0621 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 750 821 IPR013083 -
Sed05g0621 821 PANTHER OS02G0152300 PROTEIN 22 813 IPR051348 -
Sed05g0621 821 Coils Coil 369 421 - -
Sed05g0621 821 Pfam Protein tyrosine and serine/threonine kinase 473 724 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0621 821 ProSitePatterns Protein kinases ATP-binding region signature. 474 495 IPR017441 GO:0005524(InterPro)
Sed05g0621 821 CDD STK_N 21 185 - -
Sed05g0621 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0621 821 Gene3D Phosphorylase Kinase; domain 1 437 540 - -
Sed05g0621 821 Gene3D Transferase(Phosphotransferase) domain 1 541 746 - -
Sed05g0621 821 CDD RING-Ubox_WDSUB1-like 752 806 - -
Sed05g0621 821 ProSiteProfiles Protein kinase domain profile. 468 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0621 821 Pfam U-box domain 751 820 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0621 821 SMART Ubox_2 754 816 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0621 821 Coils Coil 341 361 - -
Sed05g0621 821 SUPERFAMILY RING/U-box 744 819 - -
Sed05g0621 821 SUPERFAMILY Protein kinase-like (PK-like) 446 730 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3730 Sed-Chr1:66362861 Sed05g0621 Sed-Chr5:4475665 0.00E+00 dispersed
Sed01g3731 Sed-Chr1:66362861 Sed05g0621 Sed-Chr5:4475665 0.00E+00 dispersed
Sed03g1802 Sed-Chr3:11953194 Sed05g0621 Sed-Chr5:4475665 3.30E-121 dispersed
Sed05g0621 Sed-Chr5:4475665 Sed05g1633 Sed-Chr5:30232090 6.30E-105 dispersed
Sed09g0053 Sed-Chr9:443805 Sed05g0621 Sed-Chr5:4475665 1.60E-68 dispersed
Sed05g0621 Sed-Chr5:4475665 Sed05g0622 Sed-Chr5:4475665 0.00E+00 tandem
Sed01g3729 Sed-Chr1:66362861 Sed05g0621 Sed-Chr5:4475665 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79127 PF07714 PK_Tyr_Ser-Thr 5.70E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0621 - - - 0.0