Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0621 | ATGGAGGGGATGGAAGATGAAGCTGATAAAAATCTTATGTTGCTGCCTTCCACTTCTCCAGTTGTAGCAGTTGCTATCAATGGGAAGAAAAACAGTAAATATATAATTAAGTGGTCATTGGAAAAATTTCTACCAGAGGGTATCATCAATTTCAAGTTGCTACACATCACCCCAAGGATTACTAGTGTCCCAACTCCAAATTGTGTATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAATTCAGTTCCAATTTCAAAAGTTCGTGACGATGTTGCTGCAGCTTATAGGTCAGAAATTGGGTGGCAAACGAGTGAAAAGCTTCTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTAACTCTTGAATCAGATGATGTAGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAACTTGTTATAGGAGTTTCATCACAGGGGTTTTTCTCTAGGAAACTAAACGGTATATCATCAAGAATATCAGCCCTTGCACCTAGATATTGTACAGTCTATGCTATTTCAAAAGGAAAATTAGCCTCAATACAACCGCCTGATATGAAGACATGCGTGAGCATTAAAGATGATTCGAGTGAAGCGAGTTCTGCAAATAGTTACACAAGCTATTCTTCTAGCTCACTTACAGATGGCAGTTCAAGCTTAATTACATCCTACTCTAGTTTACCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTGCAAGGAAAACTCGCCCAATTATAGCCGACCATTCTAGGTGTCATTCCGTTGATATCGAGGAGCAGGTAGATGGGGTTCGATCTTCTTCCTACGTTTCGGATTGTGCAGAAACATTGAGTCTGGCCTCTAGTGGTAAAAGCTCGCCATCAGAAAACGAAACTTGGGTTTCTGTTGAAGCTTCATCCTCAGGCTCAATCAATGATTATTCTTCATGTAGAAGTCAGGTGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCAAGGGGACTGTATGCAATTGCTCAACAAGAGACGATCGATGCCTCTCGAAAGCTGAGCCATCTAAACAAACTACGATCAGAGGAAGCCAGGAAGCTCGAAGAGATCAATAACAAAGAGGTAGCCGCCAAAGAATCTGCAAGGGAAGAGAGAGCAAGGCTTGAAGCTTTGAGAAGCGAAGCAAAGTATGTTAAAGAGCGTGCCGAAAGAGAAGGCGTGTACAGGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAGCAATACCAACATTTCCAGTGGGAAGATATTGTTTCTGCCACATCATGTTTTTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGTACAGTTTATAAGTGCAATTTGCATCATACAACTGTAGCAGTGAAAGTCCTTCACTCTAGAGATGGTCACAAACAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCATCCCCATCTACTTCTACTACTCGGTGCATGTCCCGAAAAGAATTGCCTGGTTTACGAGCACATGGAAAATGGTAGCTTGGAGGATAGGTTGCACTGCAGAGGTAATACACCTGCAATCCCATGGTATGAGAGGTACAGAATTGCTTGGGAAATAGCTTCTGCTCTTGTTTTTCTTCACAGCTCAAAGCCAAAACCAATAATCCACCGCGATCTTAAGCCAGCAAACATTTTACTTGACCAGAACCTCGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTCGATTCAGATCCTTTAATGTCAACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATGGATCCCGAGTATCAAAGAACGGGATTACTCTCTCCTAAGTCTGATGTATATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAATCAGCAGTAGCATTAACCCATGTGGTAGAAACAGCCATTGATAACAACACTTTAATAAGAGTTCTTGATATAGAGGCTGGGCATTGGCCCGTCGAAGAGACGTATGAATTGGCGAGATTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCCAACTTAAAGGATCAAGTACTTCCCTTGTTGCTGATACTGAAAAAGGTTGCAGACGAGGCTCGCAATTTGCTCTCTCGAGTTCCAGCTGCAATTCCTAATCATTTCATATGTCCAATTCTTCAGGATGTGATGAATGATCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATCGAGAAGTGGCTTCAAGAGAACGATATCTCACCGATGACGAAGTTGCCACTGTCAGATAAGAACTTAATACCAAATTATAGTCTTCTCCCTGCCATTGTTGAATGGAACTCCAGAAAAAACTAA | 2466 | 42.17 | MEGMEDEADKNLMLLPSTSPVVAVAINGKKNSKYIIKWSLEKFLPEGIINFKLLHITPRITSVPTPNCVFKLYANVDAVGNSVPISKVRDDVAAAYRSEIGWQTSEKLLPYKKMFAQRKVQLDVVTLESDDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGISSRISALAPRYCTVYAISKGKLASIQPPDMKTCVSIKDDSSEASSANSYTSYSSSSLTDGSSSLITSYSSLPSPSPSLPLQRFQALSTINQSLLARKTRPIIADHSRCHSVDIEEQVDGVRSSSYVSDCAETLSLASSGKSSPSENETWVSVEASSSGSINDYSSCRSQVDVNFELEKLRIELRHARGLYAIAQQETIDASRKLSHLNKLRSEEARKLEEINNKEVAAKESAREERARLEALRSEAKYVKERAEREGVYRKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSCFSEDLKIGMGAHGTVYKCNLHHTTVAVKVLHSRDGHKQMQFLQELEILSKIHHPHLLLLLGACPEKNCLVYEHMENGSLEDRLHCRGNTPAIPWYERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFDSDPLMSTAFKDSGPVGTLCYMDPEYQRTGLLSPKSDVYAFGMVILQLLTAKSAVALTHVVETAIDNNTLIRVLDIEAGHWPVEETYELARLGLRCAELQRKDRPNLKDQVLPLLLILKKVADEARNLLSRVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEKWLQENDISPMTKLPLSDKNLIPNYSLLPAIVEWNSRKN | 821 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4475665 | 4485495 | - | Sed0009242.1 | Sed05g0621 | 713247 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0621 | 821 | ProSiteProfiles | U-box domain profile. | 750 | 821 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g0621 | 821 | SMART | serkin_6 | 468 | 730 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0621 | 821 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 750 | 821 | IPR013083 | - | |
Sed05g0621 | 821 | PANTHER | OS02G0152300 PROTEIN | 22 | 813 | IPR051348 | - | |
Sed05g0621 | 821 | Coils | Coil | 369 | 421 | - | - | |
Sed05g0621 | 821 | Pfam | Protein tyrosine and serine/threonine kinase | 473 | 724 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g0621 | 821 | ProSitePatterns | Protein kinases ATP-binding region signature. | 474 | 495 | IPR017441 | GO:0005524(InterPro) | |
Sed05g0621 | 821 | CDD | STK_N | 21 | 185 | - | - | |
Sed05g0621 | 821 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 586 | 598 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g0621 | 821 | Gene3D | Phosphorylase Kinase; domain 1 | 437 | 540 | - | - | |
Sed05g0621 | 821 | Gene3D | Transferase(Phosphotransferase) domain 1 | 541 | 746 | - | - | |
Sed05g0621 | 821 | CDD | RING-Ubox_WDSUB1-like | 752 | 806 | - | - | |
Sed05g0621 | 821 | ProSiteProfiles | Protein kinase domain profile. | 468 | 730 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0621 | 821 | Pfam | U-box domain | 751 | 820 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g0621 | 821 | SMART | Ubox_2 | 754 | 816 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g0621 | 821 | Coils | Coil | 341 | 361 | - | - | |
Sed05g0621 | 821 | SUPERFAMILY | RING/U-box | 744 | 819 | - | - | |
Sed05g0621 | 821 | SUPERFAMILY | Protein kinase-like (PK-like) | 446 | 730 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3730 | Sed-Chr1:66362861 | Sed05g0621 | Sed-Chr5:4475665 | 0.00E+00 | dispersed | |
Sed01g3731 | Sed-Chr1:66362861 | Sed05g0621 | Sed-Chr5:4475665 | 0.00E+00 | dispersed | |
Sed03g1802 | Sed-Chr3:11953194 | Sed05g0621 | Sed-Chr5:4475665 | 3.30E-121 | dispersed | |
Sed05g0621 | Sed-Chr5:4475665 | Sed05g1633 | Sed-Chr5:30232090 | 6.30E-105 | dispersed | |
Sed09g0053 | Sed-Chr9:443805 | Sed05g0621 | Sed-Chr5:4475665 | 1.60E-68 | dispersed | |
Sed05g0621 | Sed-Chr5:4475665 | Sed05g0622 | Sed-Chr5:4475665 | 0.00E+00 | tandem | |
Sed01g3729 | Sed-Chr1:66362861 | Sed05g0621 | Sed-Chr5:4475665 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79127 | PF07714 | PK_Tyr_Ser-Thr | 5.70E-40 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0621 | - | - | - | 0.0 |