Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0622 ATGAAGACATGCGTGAGCATTAAAGATGATTCGAGTGAAGCGAGTTCTGCAAATAGTTACACAAGCTATTCTTCTAGCTCACTTACAGATGGCAGTTCAAGCTTAATTACATCCTACTCTAGTTTACCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTGCAAGGAAAACTCGCCCAATTATAGCCGACCATTCTAGGTGTCATTCCGTTGATATCGAGGAGCAGGTAGATGGGGTTCGATCTTCTTCCTACGTTTCGGATTGTGCAGAAACATTGAGTCTGGCCTCTAGTGGTAAAAGCTCGCCATCAGAAAACGAAACTTGGGTTTCTGTTGAAGCTTCATCCTCAGGCTCAATCAATGATTATTCTTCATGTAGAAGTCAGGTGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCAAGGGGACTGTATGCAATTGCTCAACAAGAGACGATCGATGCCTCTCGAAAGCTGAGCCATCTAAACAAACTACGATCAGAGGAAGCCAGGAAGCTCGAAGAGATCAATAACAAAGAGGTAGCCGCCAAAGAATCTGCAAGGGAAGAGAGAGCAAGGCTTGAAGCTTTGAGAAGCGAAGCAAAGTATGTTAAAGAGCGTGCCGAAAGAGAAGGCGTGTACAGGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAGCAATACCAACATTTCCAGTGGGAAGATATTGTTTCTGCCACATCATGTTTTTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGTACAGTTTATAAGTGCAATTTGCATCATACAACTGTAGCAGTGAAAGTCCTTCACTCTAGAGATGGTCACAAACAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCATCCCCATCTACTTCTACTACTCGGTGCATGTCCCGAAAAGAATTGCCTGGTTTACGAGCACATGGAAAATGGTAGCTTGGAGGATAGGTTGCACTGCAGAGGTAATACACCTGCAATCCCATGGTATGAGAGGTACAGAATTGCTTGGGAAATAGCTTCTGCTCTTGTTTTTCTTCACAGCTCAAAGCCAAAACCAATAATCCACCGCGATCTTAAGCCAGCAAACATTTTACTTGACCAGAACCTCGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTCGATTCAGATCCTTTAATGTCAACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATGGATCCCGAGTATCAAAGAACGGGATTACTCTCTCCTAAGTCTGATGTATATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAATCAGCAGTAGCATTAACCCATGTGGTAGAAACAGCCATTGATAACAACACTTTAATAAGAGTTCTTGATATAGAGGCTGGGCATTGGCCCGTCGAAGAGACGTATGAATTGGCGAGATTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCCAACTTAAAGGATCAAGTACTTCCCTTGTTGCTGATACTGAAAAAGGTTGCAGACGAGGCTCGCAATTTGCTCTCTCGAGTTCCAGCTGCAATTCCTAATCATTTCATATGTCCAATTCTTCAGGATGTGATGAATGATCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATCGAGAAGTGGCTTCAAGAGAACGATATCTCACCGATGACGAAGTTGCCACTGTCAGATAAGAACTTAATACCAAATTATAGTCTTCTCCCTGCCATTGTTGAATGGAACTCCAGAAAAAACTAA 1884 43.52 MKTCVSIKDDSSEASSANSYTSYSSSSLTDGSSSLITSYSSLPSPSPSLPLQRFQALSTINQSLLARKTRPIIADHSRCHSVDIEEQVDGVRSSSYVSDCAETLSLASSGKSSPSENETWVSVEASSSGSINDYSSCRSQVDVNFELEKLRIELRHARGLYAIAQQETIDASRKLSHLNKLRSEEARKLEEINNKEVAAKESAREERARLEALRSEAKYVKERAEREGVYRKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSCFSEDLKIGMGAHGTVYKCNLHHTTVAVKVLHSRDGHKQMQFLQELEILSKIHHPHLLLLLGACPEKNCLVYEHMENGSLEDRLHCRGNTPAIPWYERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFDSDPLMSTAFKDSGPVGTLCYMDPEYQRTGLLSPKSDVYAFGMVILQLLTAKSAVALTHVVETAIDNNTLIRVLDIEAGHWPVEETYELARLGLRCAELQRKDRPNLKDQVLPLLLILKKVADEARNLLSRVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEKWLQENDISPMTKLPLSDKNLIPNYSLLPAIVEWNSRKN 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4475665 4482464 - Sed0009242.2 Sed05g0622 713248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0622 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 627 IPR013083 -
Sed05g0622 627 MobiDBLite consensus disorder prediction 1 39 - -
Sed05g0622 627 ProSitePatterns Protein kinases ATP-binding region signature. 280 301 IPR017441 GO:0005524(InterPro)
Sed05g0622 627 PANTHER OS02G0152300 PROTEIN 19 619 IPR051348 -
Sed05g0622 627 ProSiteProfiles U-box domain profile. 556 627 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0622 627 Gene3D Transferase(Phosphotransferase) domain 1 347 552 - -
Sed05g0622 627 Gene3D Phosphorylase Kinase; domain 1 242 346 - -
Sed05g0622 627 SMART Ubox_2 560 622 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0622 627 Coils Coil 147 167 - -
Sed05g0622 627 Pfam Protein tyrosine and serine/threonine kinase 279 530 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0622 627 SMART serkin_6 274 536 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0622 627 CDD RING-Ubox_WDSUB1-like 558 612 - -
Sed05g0622 627 ProSiteProfiles Protein kinase domain profile. 274 536 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0622 627 MobiDBLite consensus disorder prediction 8 39 - -
Sed05g0622 627 Pfam U-box domain 557 626 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0622 627 Coils Coil 175 227 - -
Sed05g0622 627 SUPERFAMILY Protein kinase-like (PK-like) 252 536 IPR011009 -
Sed05g0622 627 SUPERFAMILY RING/U-box 550 625 - -
Sed05g0622 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0622 Sed-Chr5:4475665 Sed05g1633 Sed-Chr5:30232090 2.30E-94 dispersed
Sed05g0621 Sed-Chr5:4475665 Sed05g0622 Sed-Chr5:4475665 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79128 PF07714 PK_Tyr_Ser-Thr 3.20E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0622 - - - 0.0