Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0625 ATGGCGGAATCGGAAAGTGTGTCGGCGCCGGCGACGCCGAGAACGCCGGGAGGGGCGCTGTTTTCCGGCTTACGGGTGGATTCGCTGTCGTACGATCGTAAGTCAATGCCACGTTGCAAGTGCTTGCCTGTCAATGCTCCCACGTGGGGTAATTCTCACACGTGCCTCACTGACTTTCCTATTCCTGATGTCTCTCTCACCCGCAAGCTAGGAGCAGAATTTGTTGGAACATTCATCTTGATATTTGGTGCAACGGCAGGACCCATTGTGAACCAAAAGTACAACGGCGCCGAGACTCTGATCGGAAACGCCGCGTGCGCTGGCCTGGCGGTCATGGTTGTAATTCTGTCGACCGGACACATCTCTGGCGCCCACTTGAACCCGTCGCTCACGATCGCCTTCGCCGCGCTCCGCCACTTCCCTTGGATTCAAGTTCCTCCGTACATTGCCGCTCAGGTCTCTGCTTCCATATGTGCCTCATTCGCTCTTAAAGGCGTCTTTCACCCTTTTATGTCGGGCGGCGTCACCGTTCCTTCCGTCACCACTGGTCAGGCTTTCGCTCTCGAATTCCTCATCACTTTTAATCTCTTGTTCGTCGTCACTGCTGTCGCTACCGACACTCGCGCGGTGGGAGAATTGGCTGGAATTGCCGTCGGAGCAACGGTGATGCTGAACATTCTTGTCGCCGGGCCGTCAAGCGGCGGTTCGATGAACCCGGTTCGAACATTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTGGTGGCGCCAACGCTGGGGGCGATCGTTGGCGCCGGAACTTACACCGCCGTGAAGCTGAGAGACGACGAATTAGTGGATGCTCCGCCGCCGGTAAGGAGCTTCCGCCGCTGA 888 57.43 MAESESVSAPATPRTPGGALFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGNSHTCLTDFPIPDVSLTRKLGAEFVGTFILIFGATAGPIVNQKYNGAETLIGNAACAGLAVMVVILSTGHISGAHLNPSLTIAFAALRHFPWIQVPPYIAAQVSASICASFALKGVFHPFMSGGVTVPSVTTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAIVGAGTYTAVKLRDDELVDAPPPVRSFRR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4519609 4527870 + Sed0012481.1 Sed05g0625 713251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0625 295 SUPERFAMILY Aquaporin-like 65 281 IPR023271 -
Sed05g0625 295 PANTHER AQUAPORIN NIP2-1 64 280 IPR034294 -
Sed05g0625 295 Pfam Major intrinsic protein 64 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0625 295 Gene3D Glycerol uptake facilitator protein. 61 285 IPR023271 -
Sed05g0625 295 FunFam Aquaporin NIP2-1 56 286 - -
Sed05g0625 295 ProSitePatterns MIP family signature. 125 133 IPR022357 -
Sed05g0625 295 PRINTS Major intrinsic protein family signature 68 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0625 295 PRINTS Major intrinsic protein family signature 144 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0625 295 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0625 295 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0625 295 PRINTS Major intrinsic protein family signature 107 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0625 295 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3745 Sed-Chr1:66502974 Sed05g0625 Sed-Chr5:4519609 3.20E-147 dispersed
Sed01g3746 Sed-Chr1:66540267 Sed05g0625 Sed-Chr5:4519609 7.20E-115 dispersed
Sed05g0625 Sed-Chr5:4519609 Sed08g1332 Sed-Chr8:27656210 4.80E-55 dispersed
Sed05g1406 Sed-Chr5:27399014 Sed05g0625 Sed-Chr5:4519609 4.40E-88 transposed
Sed01g3744 Sed-Chr1:66498613 Sed05g0625 Sed-Chr5:4519609 4.10E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0625 K09874 - csv:101212651 535.028