Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0625 | ATGGCGGAATCGGAAAGTGTGTCGGCGCCGGCGACGCCGAGAACGCCGGGAGGGGCGCTGTTTTCCGGCTTACGGGTGGATTCGCTGTCGTACGATCGTAAGTCAATGCCACGTTGCAAGTGCTTGCCTGTCAATGCTCCCACGTGGGGTAATTCTCACACGTGCCTCACTGACTTTCCTATTCCTGATGTCTCTCTCACCCGCAAGCTAGGAGCAGAATTTGTTGGAACATTCATCTTGATATTTGGTGCAACGGCAGGACCCATTGTGAACCAAAAGTACAACGGCGCCGAGACTCTGATCGGAAACGCCGCGTGCGCTGGCCTGGCGGTCATGGTTGTAATTCTGTCGACCGGACACATCTCTGGCGCCCACTTGAACCCGTCGCTCACGATCGCCTTCGCCGCGCTCCGCCACTTCCCTTGGATTCAAGTTCCTCCGTACATTGCCGCTCAGGTCTCTGCTTCCATATGTGCCTCATTCGCTCTTAAAGGCGTCTTTCACCCTTTTATGTCGGGCGGCGTCACCGTTCCTTCCGTCACCACTGGTCAGGCTTTCGCTCTCGAATTCCTCATCACTTTTAATCTCTTGTTCGTCGTCACTGCTGTCGCTACCGACACTCGCGCGGTGGGAGAATTGGCTGGAATTGCCGTCGGAGCAACGGTGATGCTGAACATTCTTGTCGCCGGGCCGTCAAGCGGCGGTTCGATGAACCCGGTTCGAACATTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTGGTGGCGCCAACGCTGGGGGCGATCGTTGGCGCCGGAACTTACACCGCCGTGAAGCTGAGAGACGACGAATTAGTGGATGCTCCGCCGCCGGTAAGGAGCTTCCGCCGCTGA | 888 | 57.43 | MAESESVSAPATPRTPGGALFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGNSHTCLTDFPIPDVSLTRKLGAEFVGTFILIFGATAGPIVNQKYNGAETLIGNAACAGLAVMVVILSTGHISGAHLNPSLTIAFAALRHFPWIQVPPYIAAQVSASICASFALKGVFHPFMSGGVTVPSVTTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAIVGAGTYTAVKLRDDELVDAPPPVRSFRR | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4519609 | 4527870 | + | Sed0012481.1 | Sed05g0625 | 713251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0625 | 295 | SUPERFAMILY | Aquaporin-like | 65 | 281 | IPR023271 | - | |
Sed05g0625 | 295 | PANTHER | AQUAPORIN NIP2-1 | 64 | 280 | IPR034294 | - | |
Sed05g0625 | 295 | Pfam | Major intrinsic protein | 64 | 273 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0625 | 295 | Gene3D | Glycerol uptake facilitator protein. | 61 | 285 | IPR023271 | - | |
Sed05g0625 | 295 | FunFam | Aquaporin NIP2-1 | 56 | 286 | - | - | |
Sed05g0625 | 295 | ProSitePatterns | MIP family signature. | 125 | 133 | IPR022357 | - | |
Sed05g0625 | 295 | PRINTS | Major intrinsic protein family signature | 68 | 87 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0625 | 295 | PRINTS | Major intrinsic protein family signature | 144 | 163 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0625 | 295 | PRINTS | Major intrinsic protein family signature | 219 | 241 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0625 | 295 | PRINTS | Major intrinsic protein family signature | 188 | 206 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0625 | 295 | PRINTS | Major intrinsic protein family signature | 107 | 131 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0625 | 295 | PRINTS | Major intrinsic protein family signature | 256 | 276 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3745 | Sed-Chr1:66502974 | Sed05g0625 | Sed-Chr5:4519609 | 3.20E-147 | dispersed | |
Sed01g3746 | Sed-Chr1:66540267 | Sed05g0625 | Sed-Chr5:4519609 | 7.20E-115 | dispersed | |
Sed05g0625 | Sed-Chr5:4519609 | Sed08g1332 | Sed-Chr8:27656210 | 4.80E-55 | dispersed | |
Sed05g1406 | Sed-Chr5:27399014 | Sed05g0625 | Sed-Chr5:4519609 | 4.40E-88 | transposed | |
Sed01g3744 | Sed-Chr1:66498613 | Sed05g0625 | Sed-Chr5:4519609 | 4.10E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0625 | K09874 | - | csv:101212651 | 535.028 |