Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0626 ATGGGTTTGCTTCGATTCTTCAAACTCCGTAAAAAATCCAAAGTTGCCGATAACAAAACCGTCATGGATGCTGAAATTGAAAATGGTTTCGGCGTTTCCAAGTTTCGGTGGAGTGAGATTGAGGGTTTTACTGTCAATTTCTCCACCCTCGTCGGCTTTGGCGGCTTTAGCAACGTTTATTACGCGCGGACGCCGGCCGGAGCGGCGGCGGCGGTGAAGATTTCGGGCGGCAGTGAGCGGCTCAACCGGATGTTCCGGCAGGAATTGGACATTCTTTTGCAGCTCCGTCACCGGAATATAGTTGGCTTCATTGGCTATTGCGATGAACGAGAGGAAGGAGCTTTAGTTTTCGAATATGTCCCAAACGGGAACTTACAAGAAAAGCTCCACAGCCGGCCAGCGGCTGCGAAGACGGCGGCGCCGCCGGTTCTTCCATGGAAAACCCGGCTAAACATAGCATTCCAATTAGCCCAAGCAATCGAATACCTCCACGAGAAATGCAGCCTCCAAATCGTTCACAGCGATATCAAATCCTCAAACATTTTACTCGACGAAAAATTCAATTGCAAATTGTGCGATTTTGGGTCTGCAAAAATGGGATTCTCGTCGGCGGTGGCGAATCCGCCGCCGCCGTCGATTCCGTTCAGAGCAAAGCGGTTAATGATGGGTTCTCCCGGTTACACGGATCCCCAATATTTACGAACCGGAATCGCCTCAAAGAAGAACGACATTTACAGTTTCGGCGTTGTTCTGTTGGAGCTTCTCACCGGAAAAGAAGCATTCTGCTCGGAAAAGGGTCAGATTCTAACTTCGATCTTACCGCCGGCGATGGGCGGCGGCGGCGGAATTTCACCGTCGGCGGTGGCCGAGCTGGTGGATCCACGGCTGTCAGGGGATTTCGACGGCGGAGAAGCCGTGGCGTTGCTTTCAATTGCGGCGGCTTGCATATCGCAGCCGCCGGCGCCGAGGCCGGCGATCGGCGGCGTGTTGCAGATGATGAGGGAGAGAATTGGGAATTTTGGGGTTTGGACGGAGACACGTGGCGGAAAATAA 1053 52.99 MGLLRFFKLRKKSKVADNKTVMDAEIENGFGVSKFRWSEIEGFTVNFSTLVGFGGFSNVYYARTPAGAAAAVKISGGSERLNRMFRQELDILLQLRHRNIVGFIGYCDEREEGALVFEYVPNGNLQEKLHSRPAAAKTAAPPVLPWKTRLNIAFQLAQAIEYLHEKCSLQIVHSDIKSSNILLDEKFNCKLCDFGSAKMGFSSAVANPPPPSIPFRAKRLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELLTGKEAFCSEKGQILTSILPPAMGGGGGISPSAVAELVDPRLSGDFDGGEAVALLSIAAACISQPPAPRPAIGGVLQMMRERIGNFGVWTETRGGK 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4531828 4534740 - Sed0007273.1 Sed05g0626 713252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0626 350 SMART serkin_6 45 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0626 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0626 350 PANTHER OS01G0253100 PROTEIN 20 334 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed05g0626 350 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Sed05g0626 350 ProSiteProfiles Protein kinase domain profile. 45 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0626 350 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524(InterPro)
Sed05g0626 350 Gene3D Transferase(Phosphotransferase) domain 1 120 340 - -
Sed05g0626 350 Pfam Protein kinase domain 48 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0626 350 SUPERFAMILY Protein kinase-like (PK-like) 45 333 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0626 Sed-Chr5:4531828 Sed13g0492 Sed-Chr13:3364519 3.40E-47 dispersed
Sed01g3749 Sed-Chr1:66583651 Sed05g0626 Sed-Chr5:4531828 4.30E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79129 PF00069 Pkinase 9.20E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0626 - - - 0.0