Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0628 | ATGGAACCGGCCGGAGTTGGAGGCGGAGGATCTGGATCGAGATCGGAGTTACCTCAATTCGGAATTCCGCCGCCATTGACCGTCGACACCGCCGTAGCCGATTCTCAGCAAGTCGAAGCCGCTTCGCCGATTAGCAGCCGACCTCCGGCGCCGTCTTCCATGAACTACGAGGAACTCATTCGTCTCTCCTCCTCCGCTCAGATCGACGACGCACTCGCCGGAGACGACGCCGACAGGGGCGGCGCCGCCGCCGCCGGTAACCGGTGGCCGCGGCAGGAAACTCTCGCTCTGCTTAAAATTAGGTCGGATATGGATTCCACTTTCCGCGATGCTACTCTGAAAGGTCCTCTATGGGATGAAATCTCCAGAAAGTTAGCTGAATTGGGTTACAACAGAAGCGCAAAAAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAGCGCACAAAAGAAGGCCGTGGTGGCCGTCAAGATGGCAAAACCTACAAATTCTTCACTGAACTTGAGGCCCTTCACAACGCCGCCGTCGCAACAACCACCACTCCGACCATCGCGGCGGCGCCGGAAACGGTGGCGCCTTCTTTCTCAACGCCGCCCACTGGTTTTGGGATAATTAGCAACCCAACTCCAATCTCTGCCATTTCTTCACAAACCCCAATGGGAATGTTTTCTCCTGGTGAGCACTTCACCGTCCGGCCGCCCACGGGCGTTGCGACGGGTGTTAGCTTTTCGTCGAACACCTCGTCTGCATCTACCGAAGACGACGAGGACGAGGAAGAAGAGGAGATGGGGTTTGGTGTTGACCTGGAAGGGGAGCCGTCGAGTGGCCGGAAGCGGCGGAGGACGGCGGGTAAGGGAAGTGGGAGGAGAACACATAAGATGATGATGGATTTTTTTGAGGGTTTGATGAAGCAAGTGATGCATAAACAAGAGGTTATGCAACAGAAATTCTTGGAATCAATTGAGAAGAGGGAACAAGATAGGATGATTAGAGAAGAGACGTATAAAGTGCAAGAAATGGATAGATTAAGCCGTGAGCAAGAGAGATTTGCTCAAGAACGATCAATTTCTGCTTCTAGAGATGCTGCTATCATTGATTTTGTTCAGAAATTTACTGGCCAAACCATTCAATTACCTGTAGTCAATATCTCTACTCCACCACTCCAACCACAGCCACAACAATTTGATGTGCCAGTGTCAGCGCCAGGGCCTGTGCCTGTGCCTGCGCCTACGGCTGTGCATATGCCTGTGGCTACTACGCCTGTCGTGGCGGTGTCAGTGCCACTATCTCCTGTCCCCTCTCAGCCATTGCAACACCAAAATCAAAAAACAACAACCACTGTAAATCAGAATGAGATTCCATTGGATCAGTTTGATAAGGAAATGATGGGTTCAGAGCCAATTTCTTCAAGATGGCCAAAACCAGAAGTTTTGGCGTTGATTAAGCTGAGAGGTGGGCTTGAATCGAGGTATCAAGAGATGGGTCCAAAGGGTCCTTTATGGGAAGAGATTTCAGCTGGAATGCTACAAATGGGTTACAAGCGAAACCCCAAAAGATGCAAGGAGAAATGGGAAAACATCAATAAGTACTTCAAGAAGGTTAAAGAAAGCAACAAGAAACGCCGCGAGGATTCTAAAACCTGCCCTTATTTTGACGAACTCGACGCCCTTTACCGCAAGAAGAGCCTCGGAGTCGGTGGTGGTTCCGATGGCGGTGGTAGTGCGAGTAGAAGCTCGTTTAGAGATACGAGCAAATTCGAACAAGACCCGGTTAAGAATATGGACATGGAAATGACCCCAATCCCAACCCCTCCACAGCCCCAATCTCAAACCACGGGCTTATCCGTTAGTCTGTTTGGTGAAGGAGCGGAAGAACAAGCAACAACATCCACGAAGAAGACATTGTGA | 1914 | 50.37 | MEPAGVGGGGSGSRSELPQFGIPPPLTVDTAVADSQQVEAASPISSRPPAPSSMNYEELIRLSSSAQIDDALAGDDADRGGAAAAGNRWPRQETLALLKIRSDMDSTFRDATLKGPLWDEISRKLAELGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTELEALHNAAVATTTTPTIAAAPETVAPSFSTPPTGFGIISNPTPISAISSQTPMGMFSPGEHFTVRPPTGVATGVSFSSNTSSASTEDDEDEEEEEMGFGVDLEGEPSSGRKRRRTAGKGSGRRTHKMMMDFFEGLMKQVMHKQEVMQQKFLESIEKREQDRMIREETYKVQEMDRLSREQERFAQERSISASRDAAIIDFVQKFTGQTIQLPVVNISTPPLQPQPQQFDVPVSAPGPVPVPAPTAVHMPVATTPVVAVSVPLSPVPSQPLQHQNQKTTTTVNQNEIPLDQFDKEMMGSEPISSRWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMLQMGYKRNPKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFDELDALYRKKSLGVGGGSDGGGSASRSSFRDTSKFEQDPVKNMDMEMTPIPTPPQPQSQTTGLSVSLFGEGAEEQATTSTKKTL | 637 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4562801 | 4566454 | + | Sed0020643.2 | Sed05g0628 | 713254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0628 | 637 | ProSiteProfiles | Myb-like domain profile. | 472 | 530 | IPR001005 | - | |
Sed05g0628 | 637 | SMART | sant | 85 | 147 | IPR001005 | - | |
Sed05g0628 | 637 | SMART | sant | 470 | 532 | IPR001005 | - | |
Sed05g0628 | 637 | MobiDBLite | consensus disorder prediction | 253 | 269 | - | - | |
Sed05g0628 | 637 | CDD | GT1 | 87 | 152 | - | - | |
Sed05g0628 | 637 | ProSiteProfiles | Myb-like domain profile. | 87 | 145 | IPR001005 | - | |
Sed05g0628 | 637 | FunFam | Trihelix transcription factor GT-2 | 474 | 535 | - | - | |
Sed05g0628 | 637 | FunFam | Trihelix transcription factor GT-2 | 89 | 150 | - | - | |
Sed05g0628 | 637 | CDD | GT1 | 472 | 537 | - | - | |
Sed05g0628 | 637 | PANTHER | FI21293P1 | 64 | 581 | - | - | |
Sed05g0628 | 637 | Gene3D | - | 89 | 150 | - | - | |
Sed05g0628 | 637 | Gene3D | - | 474 | 535 | - | - | |
Sed05g0628 | 637 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed05g0628 | 637 | MobiDBLite | consensus disorder prediction | 566 | 637 | - | - | |
Sed05g0628 | 637 | Pfam | Myb/SANT-like DNA-binding domain | 87 | 173 | IPR044822 | - | |
Sed05g0628 | 637 | Pfam | Myb/SANT-like DNA-binding domain | 472 | 559 | IPR044822 | - | |
Sed05g0628 | 637 | MobiDBLite | consensus disorder prediction | 241 | 293 | - | - | |
Sed05g0628 | 637 | MobiDBLite | consensus disorder prediction | 610 | 637 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3750 | Sed-Chr1:66615867 | Sed05g0628 | Sed-Chr5:4562801 | 5.20E-173 | dispersed | |
Sed01g3751 | Sed-Chr1:66615867 | Sed05g0628 | Sed-Chr5:4562801 | 6.60E-123 | dispersed | |
Sed05g0628 | Sed-Chr5:4562801 | Sed05g3843 | Sed-Chr5:46067501 | 1.10E-80 | dispersed | |
Sed05g0627 | Sed-Chr5:4562801 | Sed05g0628 | Sed-Chr5:4562801 | 3.90E-300 | tandem | |
Sed05g0628 | Sed-Chr5:4562801 | Sed05g0629 | Sed-Chr5:4562801 | 7.70E-300 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38461 | PF13837 | Myb_DNA-bind_4 | 5.60E-22 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0628 | - | - | - | 0.0 |