Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0628 ATGGAACCGGCCGGAGTTGGAGGCGGAGGATCTGGATCGAGATCGGAGTTACCTCAATTCGGAATTCCGCCGCCATTGACCGTCGACACCGCCGTAGCCGATTCTCAGCAAGTCGAAGCCGCTTCGCCGATTAGCAGCCGACCTCCGGCGCCGTCTTCCATGAACTACGAGGAACTCATTCGTCTCTCCTCCTCCGCTCAGATCGACGACGCACTCGCCGGAGACGACGCCGACAGGGGCGGCGCCGCCGCCGCCGGTAACCGGTGGCCGCGGCAGGAAACTCTCGCTCTGCTTAAAATTAGGTCGGATATGGATTCCACTTTCCGCGATGCTACTCTGAAAGGTCCTCTATGGGATGAAATCTCCAGAAAGTTAGCTGAATTGGGTTACAACAGAAGCGCAAAAAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAGCGCACAAAAGAAGGCCGTGGTGGCCGTCAAGATGGCAAAACCTACAAATTCTTCACTGAACTTGAGGCCCTTCACAACGCCGCCGTCGCAACAACCACCACTCCGACCATCGCGGCGGCGCCGGAAACGGTGGCGCCTTCTTTCTCAACGCCGCCCACTGGTTTTGGGATAATTAGCAACCCAACTCCAATCTCTGCCATTTCTTCACAAACCCCAATGGGAATGTTTTCTCCTGGTGAGCACTTCACCGTCCGGCCGCCCACGGGCGTTGCGACGGGTGTTAGCTTTTCGTCGAACACCTCGTCTGCATCTACCGAAGACGACGAGGACGAGGAAGAAGAGGAGATGGGGTTTGGTGTTGACCTGGAAGGGGAGCCGTCGAGTGGCCGGAAGCGGCGGAGGACGGCGGGTAAGGGAAGTGGGAGGAGAACACATAAGATGATGATGGATTTTTTTGAGGGTTTGATGAAGCAAGTGATGCATAAACAAGAGGTTATGCAACAGAAATTCTTGGAATCAATTGAGAAGAGGGAACAAGATAGGATGATTAGAGAAGAGACGTATAAAGTGCAAGAAATGGATAGATTAAGCCGTGAGCAAGAGAGATTTGCTCAAGAACGATCAATTTCTGCTTCTAGAGATGCTGCTATCATTGATTTTGTTCAGAAATTTACTGGCCAAACCATTCAATTACCTGTAGTCAATATCTCTACTCCACCACTCCAACCACAGCCACAACAATTTGATGTGCCAGTGTCAGCGCCAGGGCCTGTGCCTGTGCCTGCGCCTACGGCTGTGCATATGCCTGTGGCTACTACGCCTGTCGTGGCGGTGTCAGTGCCACTATCTCCTGTCCCCTCTCAGCCATTGCAACACCAAAATCAAAAAACAACAACCACTGTAAATCAGAATGAGATTCCATTGGATCAGTTTGATAAGGAAATGATGGGTTCAGAGCCAATTTCTTCAAGATGGCCAAAACCAGAAGTTTTGGCGTTGATTAAGCTGAGAGGTGGGCTTGAATCGAGGTATCAAGAGATGGGTCCAAAGGGTCCTTTATGGGAAGAGATTTCAGCTGGAATGCTACAAATGGGTTACAAGCGAAACCCCAAAAGATGCAAGGAGAAATGGGAAAACATCAATAAGTACTTCAAGAAGGTTAAAGAAAGCAACAAGAAACGCCGCGAGGATTCTAAAACCTGCCCTTATTTTGACGAACTCGACGCCCTTTACCGCAAGAAGAGCCTCGGAGTCGGTGGTGGTTCCGATGGCGGTGGTAGTGCGAGTAGAAGCTCGTTTAGAGATACGAGCAAATTCGAACAAGACCCGGTTAAGAATATGGACATGGAAATGACCCCAATCCCAACCCCTCCACAGCCCCAATCTCAAACCACGGGCTTATCCGTTAGTCTGTTTGGTGAAGGAGCGGAAGAACAAGCAACAACATCCACGAAGAAGACATTGTGA 1914 50.37 MEPAGVGGGGSGSRSELPQFGIPPPLTVDTAVADSQQVEAASPISSRPPAPSSMNYEELIRLSSSAQIDDALAGDDADRGGAAAAGNRWPRQETLALLKIRSDMDSTFRDATLKGPLWDEISRKLAELGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTELEALHNAAVATTTTPTIAAAPETVAPSFSTPPTGFGIISNPTPISAISSQTPMGMFSPGEHFTVRPPTGVATGVSFSSNTSSASTEDDEDEEEEEMGFGVDLEGEPSSGRKRRRTAGKGSGRRTHKMMMDFFEGLMKQVMHKQEVMQQKFLESIEKREQDRMIREETYKVQEMDRLSREQERFAQERSISASRDAAIIDFVQKFTGQTIQLPVVNISTPPLQPQPQQFDVPVSAPGPVPVPAPTAVHMPVATTPVVAVSVPLSPVPSQPLQHQNQKTTTTVNQNEIPLDQFDKEMMGSEPISSRWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMLQMGYKRNPKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFDELDALYRKKSLGVGGGSDGGGSASRSSFRDTSKFEQDPVKNMDMEMTPIPTPPQPQSQTTGLSVSLFGEGAEEQATTSTKKTL 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4562801 4566454 + Sed0020643.2 Sed05g0628 713254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0628 637 ProSiteProfiles Myb-like domain profile. 472 530 IPR001005 -
Sed05g0628 637 SMART sant 85 147 IPR001005 -
Sed05g0628 637 SMART sant 470 532 IPR001005 -
Sed05g0628 637 MobiDBLite consensus disorder prediction 253 269 - -
Sed05g0628 637 CDD GT1 87 152 - -
Sed05g0628 637 ProSiteProfiles Myb-like domain profile. 87 145 IPR001005 -
Sed05g0628 637 FunFam Trihelix transcription factor GT-2 474 535 - -
Sed05g0628 637 FunFam Trihelix transcription factor GT-2 89 150 - -
Sed05g0628 637 CDD GT1 472 537 - -
Sed05g0628 637 PANTHER FI21293P1 64 581 - -
Sed05g0628 637 Gene3D - 89 150 - -
Sed05g0628 637 Gene3D - 474 535 - -
Sed05g0628 637 MobiDBLite consensus disorder prediction 1 27 - -
Sed05g0628 637 MobiDBLite consensus disorder prediction 566 637 - -
Sed05g0628 637 Pfam Myb/SANT-like DNA-binding domain 87 173 IPR044822 -
Sed05g0628 637 Pfam Myb/SANT-like DNA-binding domain 472 559 IPR044822 -
Sed05g0628 637 MobiDBLite consensus disorder prediction 241 293 - -
Sed05g0628 637 MobiDBLite consensus disorder prediction 610 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3750 Sed-Chr1:66615867 Sed05g0628 Sed-Chr5:4562801 5.20E-173 dispersed
Sed01g3751 Sed-Chr1:66615867 Sed05g0628 Sed-Chr5:4562801 6.60E-123 dispersed
Sed05g0628 Sed-Chr5:4562801 Sed05g3843 Sed-Chr5:46067501 1.10E-80 dispersed
Sed05g0627 Sed-Chr5:4562801 Sed05g0628 Sed-Chr5:4562801 3.90E-300 tandem
Sed05g0628 Sed-Chr5:4562801 Sed05g0629 Sed-Chr5:4562801 7.70E-300 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38461 PF13837 Myb_DNA-bind_4 5.60E-22 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0628 - - - 0.0