Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0629 ATGGAACCGGCCGGAGTTGGAGGCGGAGGATCTGGATCGAGATCGGAGTTACCTCAATTCGGAATTCCGCCGCCATTGACCGTCGACACCGCCGTAGCCGATTCTCAGCAAGTCGAAGCCGCTTCGCCGATTAGCAGCCGACCTCCGGCGCCGTCTTCCATGAACTACGAGGAACTCATTCGTCTCTCCTCCTCCGCTCAGATCGACGACGCACTCGCCGGAGACGACGCCGACAGGGGCGGCGCCGCCGCCGCCGGTAACCGGTGGCCGCGGCAGGAAACTCTCGCTCTGCTTAAAATTAGGTCGGATATGGATTCCACTTTCCGCGATGCTACTCTGAAAGGTCCTCTATGGGATGAAATCTCCAGAAAGTTAGCTGAATTGGGTTACAACAGAAGCGCAAAAAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATATTACAAGCGCACAAAAGAAGGCCGTGGTGGCCGTCAAGATGGCAAAACCTACAAATTCTTCACTGAACTTGAGGCCCTTCACAACGCCGCCGTCGCAACAACCACCACTCCGACCATCGCGGCGGCGCCGGAAACGGTGGCGCCTTCTTTCTCAACGCCGCCCACTGGTTTTGGGATAATTAGCAACCCAACTCCAATCTCTGCCATTTCTTCACAAACCCCAATGGGAATGTTTTCTCCTGGTGAGCACTTCACCGTCCGGCCGCCCACGGGCGTTGCGACGGGTGTTAGCTTTTCGTCGAACACCTCGTCTGCATCTACCGAAGACGACGAGGACGAGGAAGAAGAGGAGATGGGGTTTGGTGTTGACCTGGAAGGGGAGCCGTCGAGTGGCCGGAAGCGGCGGAGGACGGCGGGTAAGGGAAGTGGGAGGAGAACACATAAGATGATGATGGATTTTTTTGAGGGTTTGATGAAGCAAGTGATGCATAAACAAGAGGTTATGCAACAGAAATTCTTGGAATCAATTGAGAAGAGGGAACAAGATAGGATGATTAGAGAAGAGACGTATAAAGTGCAAGAAATGGATAGATTAAGCCGTGAGCAAGAGAGATTTGCTCAAGAACGATCAATTTCTGCTTCTAGAGATGCTGCTATCATTGATTTTGTTCAGAAATTTACTGGCCAAACCATTCAATTACCTGTAGTCAATATCTCTACTCCACCACTCCAACCACAGCCACAACAATTTGATGTGCCAGTGTCAGCGCCAGGGCCTGTGCCTGTGCCTGCGCCTACGGCTGTGCATATGCCTGTGGCTACTACGCCTGTCGTGGCGGTGTCAGTGCCACTATCTCCTGTCCCCTCTCAGCCATTGCAACACCAAAATCAAAAAACAACAACCACTGTAAATCAGAATGAGATTCCATTGGATCAGTTTGATAAGGAAATGATGGGTTCAGAGCCAATTTCTTCAAGATGGCCAAAACCAGAAGTTTTGGCGTTGATTAAGCTGAGAGGTGGGCTTGAATCGAGGTATCAAGAGATGGGTCCAAAGGGTCCTTTATGGGAAGAGATTTCAGCTGGAATGCTACAAATGGGTTACAAGCGAAACCCCAAAAGATGCAAGGAGAAATGGGAAAACATCAATAAGTACTTCAAGAAGGTTAAAGAAAGCAACAAGAAACGCCGCGAGGATTCTAAAACCTGCCCTTATTTTGACGAACTCGACGCCCTTTACCGCAAGAAGAGCCTCGGAGTCGGTGGTGGTTCCGATGGCGGTGGTAGTGCGAGTAGAAGCTCGTTTAGAGATACGAGCAAATTCGAACAAGACCCGGTTAAGAATATGGACATGGAAATGACCCCAATCCCAACCCCTCCACAGCCCCAATCTCAAACCACGGGCTTATCCGTTAGTCTGTTTGGTGAAGGAGCGGAAGAACAAGCAACAACATCCACGAAGGTAAATTCGTTAATTTGTTGA 1923 50.18 MEPAGVGGGGSGSRSELPQFGIPPPLTVDTAVADSQQVEAASPISSRPPAPSSMNYEELIRLSSSAQIDDALAGDDADRGGAAAAGNRWPRQETLALLKIRSDMDSTFRDATLKGPLWDEISRKLAELGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTELEALHNAAVATTTTPTIAAAPETVAPSFSTPPTGFGIISNPTPISAISSQTPMGMFSPGEHFTVRPPTGVATGVSFSSNTSSASTEDDEDEEEEEMGFGVDLEGEPSSGRKRRRTAGKGSGRRTHKMMMDFFEGLMKQVMHKQEVMQQKFLESIEKREQDRMIREETYKVQEMDRLSREQERFAQERSISASRDAAIIDFVQKFTGQTIQLPVVNISTPPLQPQPQQFDVPVSAPGPVPVPAPTAVHMPVATTPVVAVSVPLSPVPSQPLQHQNQKTTTTVNQNEIPLDQFDKEMMGSEPISSRWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMLQMGYKRNPKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFDELDALYRKKSLGVGGGSDGGGSASRSSFRDTSKFEQDPVKNMDMEMTPIPTPPQPQSQTTGLSVSLFGEGAEEQATTSTKVNSLIC 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4562801 4566454 + Sed0020643.3 Sed05g0629 713255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0629 640 ProSiteProfiles Myb-like domain profile. 472 530 IPR001005 -
Sed05g0629 640 MobiDBLite consensus disorder prediction 35 54 - -
Sed05g0629 640 SMART sant 85 147 IPR001005 -
Sed05g0629 640 SMART sant 470 532 IPR001005 -
Sed05g0629 640 MobiDBLite consensus disorder prediction 253 269 - -
Sed05g0629 640 CDD GT1 87 152 - -
Sed05g0629 640 MobiDBLite consensus disorder prediction 567 618 - -
Sed05g0629 640 Gene3D - 474 535 - -
Sed05g0629 640 Gene3D - 89 150 - -
Sed05g0629 640 ProSiteProfiles Myb-like domain profile. 87 145 IPR001005 -
Sed05g0629 640 Pfam Myb/SANT-like DNA-binding domain 87 173 IPR044822 -
Sed05g0629 640 Pfam Myb/SANT-like DNA-binding domain 472 559 IPR044822 -
Sed05g0629 640 FunFam Trihelix transcription factor GT-2 89 150 - -
Sed05g0629 640 FunFam Trihelix transcription factor GT-2 474 535 - -
Sed05g0629 640 CDD GT1 472 537 - -
Sed05g0629 640 MobiDBLite consensus disorder prediction 1 27 - -
Sed05g0629 640 MobiDBLite consensus disorder prediction 241 293 - -
Sed05g0629 640 PANTHER FI21293P1 64 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0627 Sed-Chr5:4562801 Sed05g0629 Sed-Chr5:4562801 1.70E-300 dispersed
Sed05g0629 Sed-Chr5:4562801 Sed05g3843 Sed-Chr5:46067501 1.10E-80 dispersed
Sed05g0628 Sed-Chr5:4562801 Sed05g0629 Sed-Chr5:4562801 7.70E-300 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38462 PF13837 Myb_DNA-bind_4 5.70E-22 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0629 - - - 0.0