Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0638 ATGAGTTGGCAGGATCCCGCTGAAGATTGTCTCGGTTGGGCCGCAAGGGATTCGTCTGGGTTTCTATCTCCTTACAAATTCACTCGTAGGGTTCTTGGAGATGATGATGTTTCAATTACAATTACACATTGTGGAGTTTGTTATGCGGATGTAGCATGGACAAGAAATAAATTAGGAGATTCCAAGTATCCTTTGGTGCCTGGGCATGAGATTGCAGGAGTCGTGAAAAATGTTGGCTCAAATGTTTGCCGATTCAAAGTTGGAGATCATGTTGGTGTAGGTACGTACGTGAATTCTTGTAGACAATGTGAATCTTGTGAAAATGATCAAGAAGCTGTTTGCATGAATGGATCCACTTATACCTTTAATGCAATTGATGTGGACGGTACAATTACAAAGGGAGGATATTCCAACTACATAGTCGTCCATGAGAGATATTGCTACAGAATACCCGACAATTATCCATTAGCTTCAGCTGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATGCTCCAATGATTCGGCATAAGATGAATCAGCCAGGAAAATCTCTTGGAGTGATTGGGCTTGGCGGTCTCGGGCACTTGGCCGTGAAGTTTGGGAAAGCTTTTGGACTGAATGTGACGGTTTTTAGCACTAGCATATCCAAGAAACTAGAAGCCATGAGCCTTCTTGGAGCAGATAAATTTATTCTCTCATCGGACATCAAGGAAATGAAGGCCATGTCTAATTCGCTCGACTTTATTATCGATTCCGCTTCTGGTGATCACCCATTTGATCCATACATGAACACATTGAAGATTGGTGGAGTTATGGTCCTGGTGGGGTTTCCTTCTCAAGTCAAATTTAGTCCTGCCAGCCTGAATTTGGGTATGTTTGAGGCCACTGACTCTTACTAA 900 42.67 MSWQDPAEDCLGWAARDSSGFLSPYKFTRRVLGDDDVSITITHCGVCYADVAWTRNKLGDSKYPLVPGHEIAGVVKNVGSNVCRFKVGDHVGVGTYVNSCRQCESCENDQEAVCMNGSTYTFNAIDVDGTITKGGYSNYIVVHERYCYRIPDNYPLASAAPLLCAGITVYAPMIRHKMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKLEAMSLLGADKFILSSDIKEMKAMSNSLDFIIDSASGDHPFDPYMNTLKIGGVMVLVGFPSQVKFSPASLNLGMFEATDSY 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4650183 4659218 + Sed0018030.2 Sed05g0638 713264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0638 299 CDD CAD1 12 288 IPR047109 GO:0016616(InterPro)
Sed05g0638 299 Gene3D - 165 291 - -
Sed05g0638 299 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
Sed05g0638 299 FunFam probable cinnamyl alcohol dehydrogenase 13 184 - -
Sed05g0638 299 FunFam Cinnamyl alcohol dehydrogenase 165 299 - -
Sed05g0638 299 SMART PKS_ER_names_mod 14 284 IPR020843 GO:0016491(InterPro)
Sed05g0638 299 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Sed05g0638 299 SUPERFAMILY GroES-like 17 183 IPR011032 -
Sed05g0638 299 Pfam Alcohol dehydrogenase GroES-like domain 33 152 IPR013154 -
Sed05g0638 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 282 IPR036291 -
Sed05g0638 299 PANTHER ALDEHYDE REDUCTASE 8 287 IPR047109 GO:0016616(InterPro)|GO:0016616(PANTHER)
Sed05g0638 299 Pfam Zinc-binding dehydrogenase 192 285 IPR013149 -
Sed05g0638 299 Gene3D - 13 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3758 Sed-Chr1:66687275 Sed05g0638 Sed-Chr5:4650183 5.20E-149 dispersed
Sed05g0638 Sed-Chr5:4650183 Sed10g0805 Sed-Chr10:5827449 2.80E-79 dispersed
Sed05g0637 Sed-Chr5:4650183 Sed05g0638 Sed-Chr5:4650183 5.20E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0638 K00083 - csv:101211438 511.146