Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0642 ATGAATTTTGAGCTGAATCGTCTTCAAAATCACCATCTTGATCCAAGAACTAGGCTCAATTTAGCGCCGGCGGAGGAAACAGCCCGTTCCGTCGCCGTAGACGGCGGCGACGGCGGAGGAGGAGTTGACCGGGAACACATGTTCGACAAAGTGGTGACGCCGAGTGACGTGGGGAAATTGAACCGGTTGGTGATTCCAAAGCAACACGCCGAGAGGTTTTTCCCGTTAGATTCGACAACAAACGACAAGGGTTTACTGTTGAACTTCGAGGATCGTAACGGGAAATCGTGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAAGGCTGGAGCCGCTTCGTCAAGGAGAAGAGCCTCAACGCCGGCGACATCGTCTCGTTCCAACGCGGGGTTGGCGAAACCGGACGAGGTCACCTCTACATTGACTGGCGCCGCCGCCCCGAACTCTCCATCGACCACCTCCACCACCGCCACCGTCCCGTTAGCGCCACTACCACCCCTTGGGGGTCACTAGTGTGGCACTCACTCGATGCTGTGAGAACTGGATACAACCGCTATCCAGTTACCGCAATGCACCGCGAGACACGGCGAACAAACAACGACGGTGACAACAACAACAACAAGGTTAATGTTGTGTGTGATTGGAATGGAGGGTGTTGTCCGTACGGATCGTATGGGAGTGTTGAGAAATCATCATCATTATCAGGGATGGGGTTTTTTAGGAGAGATAATCAGGTGGAGCAGGAGTATTTTAGTAGTGGTGGAGCTTGTTTGATGAATGATGGTGGTTCAATGGTGGTCCAAGAAGAATTGAAAACAACAAGAAATTATACAAATTATATTGGTGAAGAAGATATTACACCAGTGAAGAGATCAAGGTTGAGGCTTTTTGGTGTAAACATTTCAGATGATTGTGACTCATTATTGTCTTCTTCTTCATCTTCTAATTCAAACCCCAAAACCACTACTCCATTCCAATTGTCTTCTCCTTCAAATCAGCTTCCTCATCATCAATCATGA 1038 49.04 MNFELNRLQNHHLDPRTRLNLAPAEETARSVAVDGGDGGGGVDREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSTTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKSLNAGDIVSFQRGVGETGRGHLYIDWRRRPELSIDHLHHRHRPVSATTTPWGSLVWHSLDAVRTGYNRYPVTAMHRETRRTNNDGDNNNNKVNVVCDWNGGCCPYGSYGSVEKSSSLSGMGFFRRDNQVEQEYFSSGGACLMNDGGSMVVQEELKTTRNYTNYIGEEDITPVKRSRLRLFGVNISDDCDSLLSSSSSSNSNPKTTTPFQLSSPSNQLPHHQS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4701270 4702493 + Sed0007730.1 Sed05g0642 713268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0642 345 CDD B3_DNA 46 147 IPR003340 GO:0003677(InterPro)
Sed05g0642 345 Pfam B3 DNA binding domain 48 152 IPR003340 GO:0003677(InterPro)
Sed05g0642 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 307 IPR044800 GO:0003700(InterPro)
Sed05g0642 345 FunFam B3 domain-containing protein 41 162 - -
Sed05g0642 345 MobiDBLite consensus disorder prediction 316 345 - -
Sed05g0642 345 MobiDBLite consensus disorder prediction 24 45 - -
Sed05g0642 345 SMART B3_2 48 153 IPR003340 GO:0003677(InterPro)
Sed05g0642 345 Gene3D - 42 164 IPR015300 -
Sed05g0642 345 ProSiteProfiles B3 DNA-binding domain profile. 48 153 IPR003340 GO:0003677(InterPro)
Sed05g0642 345 SUPERFAMILY DNA-binding pseudobarrel domain 45 154 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0642 Sed-Chr5:4701270 Sed09g0569 Sed-Chr9:6384244 9.60E-55 dispersed
Sed01g3764 Sed-Chr1:66773003 Sed05g0642 Sed-Chr5:4701270 8.40E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38464 PF02362 B3 6.70E-29 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0642 K09287 - csv:101211271 327.02