Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0673 ATGAGTTGCGGTTCGGGTTTCATGTCTGGGAGTTCCGAGCCTGAGGATCGTGAGATTGTTGAGAAGGATCTAACTGGACGATATATACGGTACGATGAAATTTTGGGTAAAGGGGCATTCAAGACAGTATACAAAGCGTTCGACGAAGTTGGTGGAATCGAGGTTGCTTGGAGCCAAGTGGATATTGAAGATGTTTTGCAGTCACCAGAACAACTTCAAAGATTATATTCTGAGGTTCATCTGTTGAAGTCACTGAAACATGAGAATATCATCAAGTTCTATAGCTACTGGGTTGATGATAAGAATAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCACAGGAAAGTTGATTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCAGGGTTTAACGTATTTGCACAGTAACAATCCTCCAATTATTCACAGGGATTTGAAATGTGATAATATATTTGTCAATGGAAATACTGGAAAAGTTAAAATTGGAGATCTCGGATTGGCAATTGTCATGCAGCAGCCTGCTGCCCGTAGTGTTATCGGCACTCCAGAGTTCATGGCTCCAGAACTCTATGATGAAGAGTATAACGAACTAGTTGACATCTATTCTTTTGGCATGTGCTTGTTGGAAATTGTCACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCCCTTGAAAAAGTGTTGGACCCTCAAGTTAAGCAGCTCATAGAGAAGTGTCTGGCTCCAGCATCCATGAGACCACCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGCAATTGAAAGCCCCAAGGAGCATAGTTCTGAACCTTCAAGGTTATTGAATGGGCTGTTCAAATCAGTAAATCCTCCACTGCTGACAACAAATTCAATGGACATAGACCATAACTGCAGCAAACTCTCAGGCTCCTCATCTGTCATAAGCAGTAATGGAACTTCTCACTTGTCAACTTTAGAACTCCAGAGGCTCACTGAGAATAATGAATTGGCATTGAAAGGGGACGTGACTGATCATAATACAATATCATTCCATTTGCGCATTGCAGAATTATCTGGTAAACGTAAATCTGAGAATATCCATTTTGCCTTCTATCTTGATTCTGATACTTCTTTGGCTATTGCTTTGGAGATGGTTGAAAACCTTGAACTGCCAAATGAAGATGCTACTATCATAGCGAAATTGATTGATGAATTAATTGCCAAGTTCATTCCCAGCTGGAAACCATGTACATATTATTGTCACGAACAAACTACTGCGCATAGTTCTTCTGAATTCGAAGAGGATAAGTCCTTCATTCCTCCTCCCTTCTCTGAGCTAGTACTGCCATCTCCCTTGGTGGCTGCTGATATTAAGACTCTGACACGTTCGGCCGAGGTGGAAGATCAAGAAAACCAGCAGATGATTATCTCGTGTACATCTCTTTATTACAATCACTCAACTACCTCAGATTTCAGCACAACTGTCTCAAATTATTGTCAGGGACAAACTATTGCACATAGTTCTTCTGAATTTGAAGTGGATAAGTCCTTCATTCCTCCTCTCTTCTCTGAGCTGGTACTGTCCTTTCCCTTGTTGGCTGCTGCTATTAAAACTCCGACACATTTGGCCGACGTGGAAGATCAAGAAAACCAGCAGACGAATAACTCGTGGGCATCTATGGACTACAATCACTCAACTATCTCAGATTACAGCACAGGGAAAGGATCAGAGTTTGGTGACTTCAGCAACTCTTCATGCGACAACTGCGGAACATTTGATTTAGATGCTATTGGTTCCAATTCGATGATGATCGATTGTGCAAAACCGTCTGTAATCTCATCCTGCTCGGGAATGTCGAAAGAACTGAGTTTGTCTAGCTTTTCCACTCTTTCTCAGGAAGAAAGTGACCACCATGATGAACTCAAGATGGAGATTGATGCTATTAACTTGCAGTACCGCCAGTGCCTTAGTGAACTGTCAAGAATGAGAGAGGAAGCAGTTGAAAGTGCCAAGAAGAAGTGGACTTCAAAGAAGAAACCTTCTGTTATTTGA 2115 41.42 MSCGSGFMSGSSEPEDREIVEKDLTGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDKNKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILQGLTYLHSNNPPIIHRDLKCDNIFVNGNTGKVKIGDLGLAIVMQQPAARSVIGTPEFMAPELYDEEYNELVDIYSFGMCLLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQLIEKCLAPASMRPPASELLKDPFLAIESPKEHSSEPSRLLNGLFKSVNPPLLTTNSMDIDHNCSKLSGSSSVISSNGTSHLSTLELQRLTENNELALKGDVTDHNTISFHLRIAELSGKRKSENIHFAFYLDSDTSLAIALEMVENLELPNEDATIIAKLIDELIAKFIPSWKPCTYYCHEQTTAHSSSEFEEDKSFIPPPFSELVLPSPLVAADIKTLTRSAEVEDQENQQMIISCTSLYYNHSTTSDFSTTVSNYCQGQTIAHSSSEFEVDKSFIPPLFSELVLSFPLLAAAIKTPTHLADVEDQENQQTNNSWASMDYNHSTISDYSTGKGSEFGDFSNSSCDNCGTFDLDAIGSNSMMIDCAKPSVISSCSGMSKELSLSSFSTLSQEESDHHDELKMEIDAINLQYRQCLSELSRMREEAVESAKKKWTSKKKPSVI 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5034761 5039813 - Sed0012621.1 Sed05g0673 713299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0673 704 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 369 428 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed05g0673 704 CDD STKc_WNK 27 286 - -
Sed05g0673 704 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0673 704 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0673 704 Gene3D Phosphorylase Kinase; domain 1 13 110 - -
Sed05g0673 704 FunFam Probable serine/threonine-protein kinase WNK1 14 110 - -
Sed05g0673 704 Gene3D - 351 434 - -
Sed05g0673 704 SUPERFAMILY Protein kinase-like (PK-like) 21 286 IPR011009 -
Sed05g0673 704 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 689 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed05g0673 704 SMART serkin_6 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0673 704 Coils Coil 666 686 - -
Sed05g0673 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0673 704 Gene3D Transferase(Phosphotransferase) domain 1 112 291 - -
Sed05g0673 704 FunFam probable serine/threonine-protein kinase WNK9 112 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3792 Sed-Chr1:67090300 Sed05g0673 Sed-Chr5:5034761 8.00E-254 dispersed
Sed02g1777 Sed-Chr2:52472380 Sed05g0673 Sed-Chr5:5034761 4.30E-160 dispersed
Sed02g1778 Sed-Chr2:52472380 Sed05g0673 Sed-Chr5:5034761 5.90E-118 dispersed
Sed05g0673 Sed-Chr5:5034761 Sed08g1632 Sed-Chr8:31481504 7.80E-120 dispersed
Sed05g0673 Sed-Chr5:5034761 Sed05g0674 Sed-Chr5:5034761 4.10E-294 tandem
Sed01g3791 Sed-Chr1:67090300 Sed05g0673 Sed-Chr5:5034761 8.30E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79130 PF00069 Pkinase 7.30E-52 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0673 K08867 - csv:101207748 828.55