Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0674 ATGCAGCAGCCTGCTGCCCGTAGTGTTATCGGCACTCCAGAGTTCATGGCTCCAGAACTCTATGATGAAGAGTATAACGAACTAGTTGACATCTATTCTTTTGGCATGTGCTTGTTGGAAATTGTCACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCCCTTGAAAAAGTGTTGGACCCTCAAGTTAAGCAGCTCATAGAGAAGTGTCTGGCTCCAGCATCCATGAGACCACCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGCAATTGAAAGCCCCAAGGAGCATAGTTCTGAACCTTCAAGGTTATTGAATGGGCTGTTCAAATCAGTAAATCCTCCACTGCTGACAACAAATTCAATGGACATAGACCATAACTGCAGCAAACTCTCAGGCTCCTCATCTGTCATAAGCAGTAATGGAACTTCTCACTTGTCAACTTTAGAACTCCAGAGGCTCACTGAGAATAATGAATTGGCATTGAAAGGGGACGTGACTGATCATAATACAATATCATTCCATTTGCGCATTGCAGAATTATCTGGTAAACGTAAATCTGAGAATATCCATTTTGCCTTCTATCTTGATTCTGATACTTCTTTGGCTATTGCTTTGGAGATGGTTGAAAACCTTGAACTGCCAAATGAAGATGCTACTATCATAGCGAAATTGATTGATGAATTAATTGCCAAGTTCATTCCCAGCTGGAAACCATGTACATATTATTGTCACGAACAAACTACTGCGCATAGTTCTTCTGAATTCGAAGAGGATAAGTCCTTCATTCCTCCTCCCTTCTCTGAGCTAGTACTGCCATCTCCCTTGGTGGCTGCTGATATTAAGACTCTGACACGTTCGGCCGAGGTGGAAGATCAAGAAAACCAGCAGATGATTATCTCGTGTACATCTCTTTATTACAATCACTCAACTACCTCAGATTTCAGCACAACTGTCTCAAATTATTGTCAGGGACAAACTATTGCACATAGTTCTTCTGAATTTGAAGTGGATAAGTCCTTCATTCCTCCTCTCTTCTCTGAGCTGGTACTGTCCTTTCCCTTGTTGGCTGCTGCTATTAAAACTCCGACACATTTGGCCGACGTGGAAGATCAAGAAAACCAGCAGACGAATAACTCGTGGGCATCTATGGACTACAATCACTCAACTATCTCAGATTACAGCACAGGGAAAGGATCAGAGTTTGGTGACTTCAGCAACTCTTCATGCGACAACTGCGGAACATTTGATTTAGATGCTATTGGTTCCAATTCGATGATGATCGATTGTGCAAAACCGTCTGTAATCTCATCCTGCTCGGGAATGTCGAAAGAACTGAGTTTGTCTAGCTTTTCCACTCTTTCTCAGGAAGAAAGTGACCACCATGATGAACTCAAGATGGAGATTGATGCTATTAACTTGCAGTACCGCCAGTGCCTTAGTGAACTGTCAAGAATGAGAGAGGAAGCAGTTGAAAGTGCCAAGAAGAAGTGGACTTCAAAGAAGAAACCTTCTGTTATTTGA 1569 41.94 MQQPAARSVIGTPEFMAPELYDEEYNELVDIYSFGMCLLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQLIEKCLAPASMRPPASELLKDPFLAIESPKEHSSEPSRLLNGLFKSVNPPLLTTNSMDIDHNCSKLSGSSSVISSNGTSHLSTLELQRLTENNELALKGDVTDHNTISFHLRIAELSGKRKSENIHFAFYLDSDTSLAIALEMVENLELPNEDATIIAKLIDELIAKFIPSWKPCTYYCHEQTTAHSSSEFEEDKSFIPPPFSELVLPSPLVAADIKTLTRSAEVEDQENQQMIISCTSLYYNHSTTSDFSTTVSNYCQGQTIAHSSSEFEVDKSFIPPLFSELVLSFPLLAAAIKTPTHLADVEDQENQQTNNSWASMDYNHSTISDYSTGKGSEFGDFSNSSCDNCGTFDLDAIGSNSMMIDCAKPSVISSCSGMSKELSLSSFSTLSQEESDHHDELKMEIDAINLQYRQCLSELSRMREEAVESAKKKWTSKKKPSVI 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5034761 5039813 - Sed0012621.2 Sed05g0674 713300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0674 522 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0674 522 Pfam Protein kinase domain 6 104 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0674 522 Gene3D - 169 252 - -
Sed05g0674 522 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 507 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed05g0674 522 SUPERFAMILY Protein kinase-like (PK-like) 6 105 IPR011009 -
Sed05g0674 522 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Sed05g0674 522 Coils Coil 484 504 - -
Sed05g0674 522 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 187 246 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3791 Sed-Chr1:67090300 Sed05g0674 Sed-Chr5:5034761 2.90E-174 dispersed
Sed05g0674 Sed-Chr5:5034761 Sed11g0251 Sed-Chr11:2244660 1.50E-46 dispersed
Sed05g0673 Sed-Chr5:5034761 Sed05g0674 Sed-Chr5:5034761 4.10E-294 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79131 PF00069 Pkinase 5.40E-11 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0674 K08867 - csv:101207748 494.967