Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0674 | ATGCAGCAGCCTGCTGCCCGTAGTGTTATCGGCACTCCAGAGTTCATGGCTCCAGAACTCTATGATGAAGAGTATAACGAACTAGTTGACATCTATTCTTTTGGCATGTGCTTGTTGGAAATTGTCACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCCCTTGAAAAAGTGTTGGACCCTCAAGTTAAGCAGCTCATAGAGAAGTGTCTGGCTCCAGCATCCATGAGACCACCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGCAATTGAAAGCCCCAAGGAGCATAGTTCTGAACCTTCAAGGTTATTGAATGGGCTGTTCAAATCAGTAAATCCTCCACTGCTGACAACAAATTCAATGGACATAGACCATAACTGCAGCAAACTCTCAGGCTCCTCATCTGTCATAAGCAGTAATGGAACTTCTCACTTGTCAACTTTAGAACTCCAGAGGCTCACTGAGAATAATGAATTGGCATTGAAAGGGGACGTGACTGATCATAATACAATATCATTCCATTTGCGCATTGCAGAATTATCTGGTAAACGTAAATCTGAGAATATCCATTTTGCCTTCTATCTTGATTCTGATACTTCTTTGGCTATTGCTTTGGAGATGGTTGAAAACCTTGAACTGCCAAATGAAGATGCTACTATCATAGCGAAATTGATTGATGAATTAATTGCCAAGTTCATTCCCAGCTGGAAACCATGTACATATTATTGTCACGAACAAACTACTGCGCATAGTTCTTCTGAATTCGAAGAGGATAAGTCCTTCATTCCTCCTCCCTTCTCTGAGCTAGTACTGCCATCTCCCTTGGTGGCTGCTGATATTAAGACTCTGACACGTTCGGCCGAGGTGGAAGATCAAGAAAACCAGCAGATGATTATCTCGTGTACATCTCTTTATTACAATCACTCAACTACCTCAGATTTCAGCACAACTGTCTCAAATTATTGTCAGGGACAAACTATTGCACATAGTTCTTCTGAATTTGAAGTGGATAAGTCCTTCATTCCTCCTCTCTTCTCTGAGCTGGTACTGTCCTTTCCCTTGTTGGCTGCTGCTATTAAAACTCCGACACATTTGGCCGACGTGGAAGATCAAGAAAACCAGCAGACGAATAACTCGTGGGCATCTATGGACTACAATCACTCAACTATCTCAGATTACAGCACAGGGAAAGGATCAGAGTTTGGTGACTTCAGCAACTCTTCATGCGACAACTGCGGAACATTTGATTTAGATGCTATTGGTTCCAATTCGATGATGATCGATTGTGCAAAACCGTCTGTAATCTCATCCTGCTCGGGAATGTCGAAAGAACTGAGTTTGTCTAGCTTTTCCACTCTTTCTCAGGAAGAAAGTGACCACCATGATGAACTCAAGATGGAGATTGATGCTATTAACTTGCAGTACCGCCAGTGCCTTAGTGAACTGTCAAGAATGAGAGAGGAAGCAGTTGAAAGTGCCAAGAAGAAGTGGACTTCAAAGAAGAAACCTTCTGTTATTTGA | 1569 | 41.94 | MQQPAARSVIGTPEFMAPELYDEEYNELVDIYSFGMCLLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQLIEKCLAPASMRPPASELLKDPFLAIESPKEHSSEPSRLLNGLFKSVNPPLLTTNSMDIDHNCSKLSGSSSVISSNGTSHLSTLELQRLTENNELALKGDVTDHNTISFHLRIAELSGKRKSENIHFAFYLDSDTSLAIALEMVENLELPNEDATIIAKLIDELIAKFIPSWKPCTYYCHEQTTAHSSSEFEEDKSFIPPPFSELVLPSPLVAADIKTLTRSAEVEDQENQQMIISCTSLYYNHSTTSDFSTTVSNYCQGQTIAHSSSEFEVDKSFIPPLFSELVLSFPLLAAAIKTPTHLADVEDQENQQTNNSWASMDYNHSTISDYSTGKGSEFGDFSNSSCDNCGTFDLDAIGSNSMMIDCAKPSVISSCSGMSKELSLSSFSTLSQEESDHHDELKMEIDAINLQYRQCLSELSRMREEAVESAKKKWTSKKKPSVI | 522 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5034761 | 5039813 | - | Sed0012621.2 | Sed05g0674 | 713300 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0674 | 522 | ProSiteProfiles | Protein kinase domain profile. | 1 | 104 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0674 | 522 | Pfam | Protein kinase domain | 6 | 104 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0674 | 522 | Gene3D | - | 169 | 252 | - | - | |
Sed05g0674 | 522 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 4 | 507 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Sed05g0674 | 522 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 105 | IPR011009 | - | |
Sed05g0674 | 522 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 109 | - | - | |
Sed05g0674 | 522 | Coils | Coil | 484 | 504 | - | - | |
Sed05g0674 | 522 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 187 | 246 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3791 | Sed-Chr1:67090300 | Sed05g0674 | Sed-Chr5:5034761 | 2.90E-174 | dispersed | |
Sed05g0674 | Sed-Chr5:5034761 | Sed11g0251 | Sed-Chr11:2244660 | 1.50E-46 | dispersed | |
Sed05g0673 | Sed-Chr5:5034761 | Sed05g0674 | Sed-Chr5:5034761 | 4.10E-294 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79131 | PF00069 | Pkinase | 5.40E-11 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0674 | K08867 | - | csv:101207748 | 494.967 |