Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0692 ATGAATTTTCATGGAGGAGATTCGTATACGAAGTCTTGTGTTCCGGTTCAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGAGCTTGTGCAGGTCCACTGGTTGATGTACCTCAAGTTAATGAGAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCAAAGATTCTCTGTCGCGTAATTAATATCCAGCCACTGGCTGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCTAATCAAAATGAGCCTGAAAGTCTAGATCCATGCCTTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTTTGTAAGGTTTTAACTGCCTCTGATACCAGCACTCATGGTGGGTTTTCCGTCCTCCGAAAACATGCTAATGAGTGTCTACCTCCCTTGGACATGACTCAGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCATGGATATGAGTGGCGATTCAAACATATTTTCAGAGGTCAGCCACGAAGGCACCTGCTAACGACAGGCTGGAGTGCATTTGTTACTTCTAAAAGATTATCTGCTGGAGATTCCTTTGTATTCTTGAGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCATCATCTGTGATATCAAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGTTTTGTAGTCTACTATAAACCTAGGACGTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAGTCACAAATTTTCTCTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCCCCAGAGAGAAGGTTTTCGGGAACTATAATTGGAGCCGAAGATATTTCACCTCATTGGACTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTCCAAGACCTGACAGAGTTTCGCCTTGGGATATTGAACCACTCACATCTTCAGCAGTCACAAGTCTGTCTCAACCCATTTCGAAAAACAAAAGGCCTCGACAACCAACTGAAACTCCATCTCTTGATGGTACTGCTTTGGCTAAGTCGGCACATTGGGATTCTGGATTGGCACAGTCTCATGATGGTAAACAGTGCAGTAATGCAGCTGAAAACAGAGAAGGTGAAATTAATGAATTGAGTCATCATAGAGAGACGGATACGATCAGCAACAGTACATGTGTATCAAGAACACAGACTGATGGGACCTGGCTACTTTCTACTCAATCCAATGATTATAAACACCCAGTAAATGATACATCTCAGGATTATAAAACTGTCCCTGCATGTGGTTGGCCTTTTCTGTCGGGACCTGCAAAGTTGAGTGATGATCAAATACTTGATCCCACTGAAAATGGGAAGAAAGACGAAACGGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAAATTTCCTGCTGAAAATGCATCTTCTCAACCGAGCGGTGTGTCTAACGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCCGACAACTTAGAGGTCTCTATAGAAAGGAAGTCAGAACCATTACAAGCATCTTTGAAGGAGACTCAAAGTGGCTTAATCAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTACGACCAATTAATCGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTCTGCTCGAGATAAGTGGGAGATTGTATACACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGATCCATGGGAAGAATTTTGCAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAACAAGCAACTGACGTCGATAGAAGTCGAAGGGGCAGTAATATTCCCCGACACCCCTGCAATTTGA 2070 43.72 MNFHGGDSYTKSCVPVQGCGRDDLYMELWRACAGPLVDVPQVNERVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVINIQPLADHESDEVYAQITLMPESNQNEPESLDPCLPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSAFVTSKRLSAGDSFVFLRGDNGQLRVGVRRRAQQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVSHKFSLGMRFNMSFEGEDSPERRFSGTIIGAEDISPHWTNSSWRSLRVQWDEQTSIPRPDRVSPWDIEPLTSSAVTSLSQPISKNKRPRQPTETPSLDGTALAKSAHWDSGLAQSHDGKQCSNAAENREGEINELSHHRETDTISNSTCVSRTQTDGTWLLSTQSNDYKHPVNDTSQDYKTVPACGWPFLSGPAKLSDDQILDPTENGKKDETVASCRLFGIDLNHLAKFPAENASSQPSGVSNDTDGRISTLSVAQSDPKSDNLEVSIERKSEPLQASLKETQSGLINTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLSARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGNKQLTSIEVEGAVIFPDTPAI 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5175632 5180670 + Sed0017121.1 Sed05g0692 713318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0692 689 FunFam Auxin response factor 127 231 - -
Sed05g0692 689 FunFam Auxin response factor 290 361 - -
Sed05g0692 689 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Sed05g0692 689 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Sed05g0692 689 Gene3D - 126 231 IPR015300 -
Sed05g0692 689 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Sed05g0692 689 Gene3D - 574 666 - -
Sed05g0692 689 MobiDBLite consensus disorder prediction 361 385 - -
Sed05g0692 689 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed05g0692 689 Pfam AUX/IAA family 572 614 IPR033389 -
Sed05g0692 689 Pfam AUX/IAA family 624 656 IPR033389 -
Sed05g0692 689 SUPERFAMILY CAD & PB1 domains 575 654 - -
Sed05g0692 689 Gene3D - 290 363 - -
Sed05g0692 689 FunFam Auxin response factor 574 666 - -
Sed05g0692 689 SUPERFAMILY DNA-binding pseudobarrel domain 116 258 IPR015300 -
Sed05g0692 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 667 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed05g0692 689 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677(InterPro)
Sed05g0692 689 ProSiteProfiles PB1 domain profile. 578 659 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0692 Sed-Chr5:5175632 Sed13g0775 Sed-Chr13:5620801 1.00E-225 dispersed
Sed01g3807 Sed-Chr1:67230083 Sed05g0692 Sed-Chr5:5175632 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38469 PF02362 B3 2.10E-21 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0692 K14486 - csv:101209208 1189.1