Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0731 ATGGATTTCGACTCTGTTTTCGACCTCCCCATTAAATTCACCGAGCATCGCCGCCGTGTTCAGCTCGCTTCGCCGCCGGAAATCGCTCCGAGGGTCGTACGGATTTCGGTCACCGACGGCGACGCCACCGATTCCTCCAGCGACGAGGAGGCCGAGATGTTTGGTCGACTTCGAGTGAAGAAATTTGTGAATGAGATTTCGATTGAGCCGTCGTGTTCCGGCGGAGGGAATGTGAGCAGATCGGCGAAGAATGGTCGGAGACGGTCGTCGGGGAAATCGGGGGTCCGGTCGGTGAAGATTCAGGATGGGAAGAAGTTCAGAGGCGTGAGACGGAGGCCGTGGGGGAAATGGGCTGCGGAAATCAGAGACCCGCTCCGCCGTGTGCGACTGTGGCTCGGAACTTACGACACGGCGGAGGAAGCTGCCATGGTTTACGACAACGCCGCCATTCAACTCCGTGGGCCCGATGCATTCACTAATTTCACAACCCAACATTCGAAAAGATTCTCTGGCTACTTTTCCGGCGAGGAGTCGAACAACAACAACAACGACATTTGCTCTCCGACCTCTGTTCTCCGATGCCCGTCTCCGCAGCCTCACGCGGAGGCTCACTCTCAACTTCCCGGCCACCCGGACTTTTCCGGGTCGGAAAATTTCTCGTCCGGGTTATCCGATTTCTCCAGCTGCTCCGACACCTTCATTCCCGGCGACATTTTCGCCTTCGAAACTTCGGCTCCGACCTTGTTCGACGACGAGTTCTTAAACGGCGCGTTTCATCACAGTCCCGTCGAAGAAATCGGATCCGGATTCGGGTTCAAATACCGGACAACCCATGAAGACTACTTTCAGGACTTCGGCGACGTTTTCGGGTCGGATCCTCTCGTCGCTCTTTAG 894 56.26 MDFDSVFDLPIKFTEHRRRVQLASPPEIAPRVVRISVTDGDATDSSSDEEAEMFGRLRVKKFVNEISIEPSCSGGGNVSRSAKNGRRRSSGKSGVRSVKIQDGKKFRGVRRRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDAFTNFTTQHSKRFSGYFSGEESNNNNNDICSPTSVLRCPSPQPHAEAHSQLPGHPDFSGSENFSSGLSDFSSCSDTFIPGDIFAFETSAPTLFDDEFLNGAFHHSPVEEIGSGFGFKYRTTHEDYFQDFGDVFGSDPLVAL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5498750 5500163 - Sed0025189.1 Sed05g0731 713357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0731 297 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0731 297 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0731 297 MobiDBLite consensus disorder prediction 195 218 - -
Sed05g0731 297 CDD AP2 104 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0731 297 SUPERFAMILY DNA-binding domain 105 163 IPR016177 GO:0003677(InterPro)
Sed05g0731 297 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Sed05g0731 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 203 IPR050913 -
Sed05g0731 297 MobiDBLite consensus disorder prediction 73 99 - -
Sed05g0731 297 Pfam AP2 domain 105 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0731 297 SMART rav1_2 105 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0731 297 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0731 297 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0731 Sed-Chr5:5498750 Sed13g0805 Sed-Chr13:5981464 2.50E-59 dispersed
Sed01g3830 Sed-Chr1:67478298 Sed05g0731 Sed-Chr5:5498750 2.30E-111 wgd
Sed05g0731 Sed-Chr5:5498750 Sed07g1568 Sed-Chr7:12484251 5.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38471 PF00847 AP2 1.10E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0731 - - - 0.0