Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0734 ATGGAAGCTCTGTGGATTTTCAGCTTTGTTTTCGTTGTGGGGTTGGTTGTTTCTCCCATCAATGGCGACCCAGTTGAAGATAAGTTGGCTTTGCTTGATTTTGTGAAGAATCTACCACATTCTCGTTCTCTTAATTGGAATGTGGCTTCTCCTGTTTGCAATTACTGGACTGGTATAACTTGCAGTGATGATGGGTCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTCCATGGCCCAATCCCGGCGAACACTCTCAGCCGGCTCTCGGGGCTGGAAGTATTGAGTCTCAGATCCAACCGTATAACGGGGGATTTCCCTTCTGATTTTGTGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTTAACAGCTTCTCTGGGCCATTGCCTTCCAATTTCTCTGCTTGGAAGAATCTCACCTTTGTAAATCTCTCTAACAATGGCTTTAATGGACGCATCCCTTATTCGCTTTCGAATCTGACGGAGCTTACGGGTTTGAATCTCGCAAACAACTCTCTCTCAGGAGAAATACCTGACCTCCAAATGCCCAAATTGCTAGTTCTGGATTTGTCTAACAACAATTTTTGTGGGAGTGTGCCTAAATCCTTACAGAGATTTCCAAGGTCTGTATTTGTGGGAAATGACGTATCCTTTGAGAGCCCTTTGCCTAACAATCCTCCCGTATCTCCGACATTGCCCGTGTCGAATGAAAAGCCGAAGAATGCTGGGGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTTTAGCATTTGGCTTTCTGGTACTTATTTGCTTTTCAAGAAGGAAGGGAGAAGAATATCCCGGGGATCTGCAAAAAGGCGGAATGTCGCCCGAGAAGGTGATATCAAGGACGCAAGACGCAAACAACAAGTTGGTCTTCTTTGAGGGGTGCCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATACAGAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGTTGAAGGATGTGAGCGCTGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCATGAGAATGTGGTTGAGTTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTATAATCAGGGAAGTGTATCGGCTATGTTACATGGAAAACGTGGAGAGGAAAAACCTCCTTTAGATTGGGAAACTAGACTGAAAATTGCAGTTGGTGCAGCTCGAGGGATCGACCGCGTCCATGCTGAAAGTGGAGGGAAGCTCATCCATGGAAATGTAAAAGCCTCAAACATCTTTCTGAACTCTCAACAGTACGGATGTGTTTCTGATCTTGGACTAGCAACCATAACAAGCTCACTCTCTCCACCCATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACCGACACTCGCAAGGCAACACAGGCGTCAGATGTTTTCAGCTTCGGCGTGGTTCTCCTCGAGCTTCTAACCGGAAAGTCTCCGATACACGCGACGGGTGGTGAAGAGATCGTCCACCTGGTGAGATGGGTTCATTCAGTTGTCAGAGAGGAGTGGACAGCTGAAGTATTTGATGTAGAGCTGATGAGGTATCCCAACATAGAGGAAGAAATGGTGGAGATGTTGCAGATAGCCTTATCATGTGTGGCTAGGATACCAGATCAGAGGCCGAAAATGGCAGAAGTTGTCAAGATGATCGAAAGCGTTCGACCAATGGAAGCCGAGAACCAACCTTCTTCCACGTACCGATCTGAAAGTTCAATGCCACAGGCTGTTGAGACAGAAAATTCAACCTCTCAGTGA 1884 46.28 MEALWIFSFVFVVGLVVSPINGDPVEDKLALLDFVKNLPHSRSLNWNVASPVCNYWTGITCSDDGSRVIAVRLPGVGFHGPIPANTLSRLSGLEVLSLRSNRITGDFPSDFVNLSNLSYLYLQFNSFSGPLPSNFSAWKNLTFVNLSNNGFNGRIPYSLSNLTELTGLNLANNSLSGEIPDLQMPKLLVLDLSNNNFCGSVPKSLQRFPRSVFVGNDVSFESPLPNNPPVSPTLPVSNEKPKNAGGLGEAALLGIIIAGGILGLLAFGFLVLICFSRRKGEEYPGDLQKGGMSPEKVISRTQDANNKLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYRAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFYNQGSVSAMLHGKRGEEKPPLDWETRLKIAVGAARGIDRVHAESGGKLIHGNVKASNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEVVKMIESVRPMEAENQPSSTYRSESSMPQAVETENSTSQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5535172 5538743 - Sed0001242.1 Sed05g0734 713360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0734 627 FunFam pollen receptor-like kinase 1 294 399 - -
Sed05g0734 627 PANTHER OS05G0588300 PROTEIN 8 610 IPR050994 -
Sed05g0734 627 Gene3D Transferase(Phosphotransferase) domain 1 401 619 - -
Sed05g0734 627 MobiDBLite consensus disorder prediction 600 627 - -
Sed05g0734 627 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Sed05g0734 627 Gene3D Phosphorylase Kinase; domain 1 292 399 - -
Sed05g0734 627 Pfam Protein tyrosine and serine/threonine kinase 329 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0734 627 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0734 627 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515(InterPro)
Sed05g0734 627 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Sed05g0734 627 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Sed05g0734 627 MobiDBLite consensus disorder prediction 597 627 - -
Sed05g0734 627 Gene3D Ribonuclease Inhibitor 25 225 IPR032675 -
Sed05g0734 627 SUPERFAMILY Protein kinase-like (PK-like) 329 614 IPR011009 -
Sed05g0734 627 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 607 - -
Sed05g0734 627 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Sed05g0734 627 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515(InterPro)
Sed05g0734 627 SUPERFAMILY L domain-like 37 208 - -
Sed05g0734 627 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0734 Sed-Chr5:5535172 Sed07g0967 Sed-Chr7:7106765 4.00E-168 dispersed
Sed01g3832 Sed-Chr1:67510228 Sed05g0734 Sed-Chr5:5535172 4.50E-260 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79135 PF07714 PK_Tyr_Ser-Thr 3.10E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0734 - - - 0.0