Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0755 | ATGGGCACGAAAGAGCCGAGTTCTGGCAGTGAAGGCAAGATTAAAGGGGTCCTCACCCATGGCGGCAGATATGTTCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCTGCTAAGTATGTTCCTCCTTTGCGGCCCATTGGTCGAGGGGCTTGTGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCCTTTGATAACATAATTGATGCCAAAAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATCGCCATCAGAGACATCATTCGACCACCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTATGAATTGATGGACACTGATCTTCATCAAATAATTCGATCTGACCAAGCTCTGACAGACGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAATATGTACATTCAGCAAAGGTCCTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTCAAAATTGGAGACTTTGGATTGGCTAGGACGACTTCTGAAACCGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGTGCACCGGAATTGCTCCTCAATTGTTCAGAGTACACTGCTGCTATTGATGTTTGGTCTGTTGGATGCATACTTGGTGAGATAATGACCAGAGAGCCTCTCTTTCCTGGAAAAGATTATGTTCATCAACTTAGACTTATAACTGAGCTGCTAGGATCACCAGATGATGCCAGCCTAGGATTCCTCCGAAGTGACAATGCGCGAAGATACGTCAAGCAGCTTCCGCAGTACAGGAAACAACAATTCTCAACTAGATTTCCCAATATGTCTCCAGCTGCCCTGGATCTTCTAGAAAAGATGCTCGTATTTGATCCCAACAAACGCATTACAGTGGAGGAGGCTCTTTGTCATCCATACTTACAATCTCTTCACGACATCAACGATGAACCAGTCTGTGCCAGGCCTTTCAATTTCGAATTCGAGCAACCATCGTGCACCGAAGAGCATATCAAAGAACTCATCTGGAAAGAATCCGTCCGGTTCAATCCTGATGAATCCGCAAGGAGGACGACTCTTTGCATTTGA | 1146 | 43.63 | MGTKEPSSGSEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGACGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQALTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFEFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCI | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5911782 | 5916970 | + | Sed0006627.1 | Sed05g0755 | 713381 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0755 | 381 | SUPERFAMILY | Protein kinase-like (PK-like) | 44 | 335 | IPR011009 | - | |
Sed05g0755 | 381 | ProSiteProfiles | Protein kinase domain profile. | 41 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0755 | 381 | Pfam | Protein kinase domain | 45 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0755 | 381 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 163 | 175 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g0755 | 381 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 34 | 363 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed05g0755 | 381 | CDD | STKc_TEY_MAPK | 34 | 370 | - | - | |
Sed05g0755 | 381 | Gene3D | Transferase(Phosphotransferase) domain 1 | 125 | 354 | - | - | |
Sed05g0755 | 381 | ProSitePatterns | MAP kinase signature. | 76 | 179 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0755 | 381 | Gene3D | Phosphorylase Kinase; domain 1 | 24 | 364 | - | - | |
Sed05g0755 | 381 | SMART | serkin_6 | 41 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g0755 | 381 | FunFam | Mitogen-activated protein kinase | 26 | 135 | - | - | |
Sed05g0755 | 381 | FunFam | Mitogen-activated protein kinase | 125 | 354 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1024 | Sed-Chr1:7594925 | Sed05g0755 | Sed-Chr5:5911782 | 3.50E-127 | dispersed | |
Sed03g2599 | Sed-Chr3:41777046 | Sed05g0755 | Sed-Chr5:5911782 | 1.50E-160 | dispersed | |
Sed04g0107 | Sed-Chr4:649301 | Sed05g0755 | Sed-Chr5:5911782 | 3.00E-161 | dispersed | |
Sed04g2249 | Sed-Chr4:36227124 | Sed05g0755 | Sed-Chr5:5911782 | 4.20E-181 | dispersed | |
Sed05g0755 | Sed-Chr5:5911782 | Sed09g0034 | Sed-Chr9:288220 | 4.20E-184 | dispersed | |
Sed01g3856 | Sed-Chr1:67813320 | Sed05g0755 | Sed-Chr5:5911782 | 2.50E-221 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79136 | PF00069 | Pkinase | 2.00E-70 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0755 | K20600 | - | csv:101214254 | 756.903 |