Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0755 ATGGGCACGAAAGAGCCGAGTTCTGGCAGTGAAGGCAAGATTAAAGGGGTCCTCACCCATGGCGGCAGATATGTTCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCTGCTAAGTATGTTCCTCCTTTGCGGCCCATTGGTCGAGGGGCTTGTGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCCTTTGATAACATAATTGATGCCAAAAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATCGCCATCAGAGACATCATTCGACCACCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTATGAATTGATGGACACTGATCTTCATCAAATAATTCGATCTGACCAAGCTCTGACAGACGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAATATGTACATTCAGCAAAGGTCCTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTCAAAATTGGAGACTTTGGATTGGCTAGGACGACTTCTGAAACCGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGTGCACCGGAATTGCTCCTCAATTGTTCAGAGTACACTGCTGCTATTGATGTTTGGTCTGTTGGATGCATACTTGGTGAGATAATGACCAGAGAGCCTCTCTTTCCTGGAAAAGATTATGTTCATCAACTTAGACTTATAACTGAGCTGCTAGGATCACCAGATGATGCCAGCCTAGGATTCCTCCGAAGTGACAATGCGCGAAGATACGTCAAGCAGCTTCCGCAGTACAGGAAACAACAATTCTCAACTAGATTTCCCAATATGTCTCCAGCTGCCCTGGATCTTCTAGAAAAGATGCTCGTATTTGATCCCAACAAACGCATTACAGTGGAGGAGGCTCTTTGTCATCCATACTTACAATCTCTTCACGACATCAACGATGAACCAGTCTGTGCCAGGCCTTTCAATTTCGAATTCGAGCAACCATCGTGCACCGAAGAGCATATCAAAGAACTCATCTGGAAAGAATCCGTCCGGTTCAATCCTGATGAATCCGCAAGGAGGACGACTCTTTGCATTTGA 1146 43.63 MGTKEPSSGSEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGACGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQALTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFEFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCI 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5911782 5916970 + Sed0006627.1 Sed05g0755 713381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0755 381 SUPERFAMILY Protein kinase-like (PK-like) 44 335 IPR011009 -
Sed05g0755 381 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0755 381 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0755 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0755 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 34 363 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed05g0755 381 CDD STKc_TEY_MAPK 34 370 - -
Sed05g0755 381 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
Sed05g0755 381 ProSitePatterns MAP kinase signature. 76 179 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0755 381 Gene3D Phosphorylase Kinase; domain 1 24 364 - -
Sed05g0755 381 SMART serkin_6 41 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0755 381 FunFam Mitogen-activated protein kinase 26 135 - -
Sed05g0755 381 FunFam Mitogen-activated protein kinase 125 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1024 Sed-Chr1:7594925 Sed05g0755 Sed-Chr5:5911782 3.50E-127 dispersed
Sed03g2599 Sed-Chr3:41777046 Sed05g0755 Sed-Chr5:5911782 1.50E-160 dispersed
Sed04g0107 Sed-Chr4:649301 Sed05g0755 Sed-Chr5:5911782 3.00E-161 dispersed
Sed04g2249 Sed-Chr4:36227124 Sed05g0755 Sed-Chr5:5911782 4.20E-181 dispersed
Sed05g0755 Sed-Chr5:5911782 Sed09g0034 Sed-Chr9:288220 4.20E-184 dispersed
Sed01g3856 Sed-Chr1:67813320 Sed05g0755 Sed-Chr5:5911782 2.50E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79136 PF00069 Pkinase 2.00E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0755 K20600 - csv:101214254 756.903