Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0758 ATGGCTCGAGAGCTTTGTGGAGGTGGAGGGTTTTACTCTTCCTATTCCAACATTCAAACCCGGATCCCGACCGGGTTCGGACCAGGTGGAGAGCCGGCGGAGTTTTTCAATTTGGGGTCAACCGGCGGCGGCGGCGGCGGAGATGGGTTTCATCAGAACATGATGGTGGTTGAGCCGTGGGGGACGGCGGCGCTAGATGATTCCTCTTTGAGATGTTTGTTTCCATATGAACCAAATGAAAGGCCAAGCCAAGGCCTTTCTTTGTCACTTAGTTCCTCTAATTTTCCCATTTTTCAGCTTCCAAATTCTAAGTTTTTGGGCCCTGCTCAGGAGCTTCTTTATGAGTTTTGTAGCCTTGATTCTTGCTGTTCTTCTTCTTCACCAAAACATAAAGGGAATAGGCCAAAAAAATGGGAGTTAATGGAAGATTATTCTTCCAATTCTAGGAAGTTGTCTCTTCAATCATCACTTGATTTCTTGGAGTTGCAAAAGAGAAAAACCAACCTTTTTTCCATGCTTGAAGAGGTTGAAAGAAGGTACAAGCATTACATAGAGCAAATGAAGGTGGTGGTGGCGTCCTTCGAGGCGGTGGCGGGGAGCGGGGCGGCGAGAGTTTACTCGGCGCAGGCGTCGAAGGCGATGTCAAGGCATTTCAGGTGTCTGAAAGATGGAATTGTGGGGGAAATTAAGGCCACAAAAAAGGCAATGGGAGAAAAGGATGCAATTGCACCAGGGACCACGAGTGGAGAAACGCCGAGGCTTAGAGTGATCGATCAGGCTTTAAGGCAACAACGAGCGTTTCATCAAATGAGTTCGATGGATAGCCAACCTTGGCGCCCTCAACGCGGCCTTCCCGAGCGTTCGGTTTCGGCTCTTCGCGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTTGATAAACATATTTTAGCTCGCCAAACGGGTCTCTCAAGAAGCCAGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAGATGTATTTAGAAGAAACAAAGGAACAAGAACAAGAGATTAACAACAATGGCGATAATTCTTCGGATGGAGTGGAGGTCGATTTCGACAATGAAATCGATCGTAATCAATTGATCCCGACATGGTTTGTGGATCAAAAACCAACGTCGGACCAACTCTTGAAAATAGACTCAGAATGTCTCTCTTCAATCATTTCTAACAACTCCGAAAAGAACGATTCAAGAGTTATGAAAACCATACAAAACCGCCACCACCTCCACCACAACCACGATCAGACCTTCGACGCATTCGGCGCGATGGAGCTTGACTTCTCGTCCTACAACAACCACTCAGGTAACGATAGAGTTTCATTCCCTAACAACAACTCTCAACACTTCAACAATGGTGGTAGTAGCAGTGGCAATGTGTCGTTGACGTTAGGGTTACAACAGCATGCTACAGCCGGCAGGAACGGTGGCGGAGAGGTGAGCATTGCCTTCTCGTCGACTGCGGGGGAAGCACAAAGCTCCATTTTCATGACAAGAGATCAGGTTGAAGATTGCCAACAAGTTCAATATTCACTTTATGAAGGAGAAGCTCAAAATCTTCCTTATAGAAACTTGATGGGGGCTCAATTGCTTCATGACTTGGTTGGATGA 1662 47.17 MARELCGGGGFYSSYSNIQTRIPTGFGPGGEPAEFFNLGSTGGGGGGDGFHQNMMVVEPWGTAALDDSSLRCLFPYEPNERPSQGLSLSLSSSNFPIFQLPNSKFLGPAQELLYEFCSLDSCCSSSSPKHKGNRPKKWELMEDYSSNSRKLSLQSSLDFLELQKRKTNLFSMLEEVERRYKHYIEQMKVVVASFEAVAGSGAARVYSAQASKAMSRHFRCLKDGIVGEIKATKKAMGEKDAIAPGTTSGETPRLRVIDQALRQQRAFHQMSSMDSQPWRPQRGLPERSVSALRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEQEINNNGDNSSDGVEVDFDNEIDRNQLIPTWFVDQKPTSDQLLKIDSECLSSIISNNSEKNDSRVMKTIQNRHHLHHNHDQTFDAFGAMELDFSSYNNHSGNDRVSFPNNNSQHFNNGGSSSGNVSLTLGLQQHATAGRNGGGEVSIAFSSTAGEAQSSIFMTRDQVEDCQQVQYSLYEGEAQNLPYRNLMGAQLLHDLVG 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5931807 5936151 - Sed0010193.1 Sed05g0758 713384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0758 553 SMART prehox3 94 227 IPR006563 -
Sed05g0758 553 FunFam BEL1-like homeodomain protein 4 281 343 - -
Sed05g0758 553 SUPERFAMILY Homeodomain-like 279 344 IPR009057 -
Sed05g0758 553 Pfam Associated with HOX 100 225 IPR006563 -
Sed05g0758 553 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 362 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g0758 553 Pfam Homeobox KN domain 295 334 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g0758 553 SMART HOX_1 278 342 IPR001356 GO:0003677(InterPro)
Sed05g0758 553 ProSiteProfiles 'Homeobox' domain profile. 275 338 IPR001356 GO:0003677(InterPro)
Sed05g0758 553 CDD homeodomain 278 339 IPR001356 GO:0003677(InterPro)
Sed05g0758 553 Gene3D - 281 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3860 Sed-Chr1:67846577 Sed05g0758 Sed-Chr5:5931807 3.60E-193 dispersed
Sed05g0758 Sed-Chr5:5931807 Sed05g3422 Sed-Chr5:43217900 1.20E-70 dispersed
Sed01g3859 Sed-Chr1:67846577 Sed05g0758 Sed-Chr5:5931807 3.60E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38473 PF07526 POX 5.90E-40 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0758 - - - 0.0