Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g0770 | ATGGATGCGGCAGTGGCGGCGGTAATGGCGGCGGTGGCGTATTTAATTTGGTTCTTGAATATCCAACGGTCGATGAGTGGTCCACGTGTCTGGCCACTATTGGGCAGTCTTCCGGGGCTGATAAAAAACAGTCATCGAATGCATGACTGGATCGCGGAGAATCTACGGTCAACGGGCGGCACGTACCAGACTTGCACGTGCGCCGTTCCGTTTTTGGCTAAGAAGCAGGCGCTGGTGACTGTCACGTGCGACGCGAAGAATTTGGAGCATATATTAAAGACCCGGTTCGAAAACTATCCCAAGGGGCCTAATTGGCAGGCTGTGTTTCATGATTTGCTTGGTGATGGGATCTTCAACTCGGATGGTGACACGTGGCTGTTCCAGCGCAAGGCAGCTGCGCTGGAATTTACCACCAGGACTCTCCGTCTTGCCATGGCTCGTTGGGTTAACCGAGCTATTGAGTCTCGGTTGTGCCCGATTCTGGAGTCGGCTCAGCGTGGTGCTGAGCCGGTAGATGTTCAGGATCTGTTGCTTCGGCTTACATTTGATAACATATGCGGATTGACTTTCGGTAAGGATCCGCAGACTCTGGCTCACGATTTCCCTGAAAACGGGTTTGCTACGGCTTTCGATGCAGCGACCGAAGCCACATTGTGTCGCTTTATTCTGCCTAACTTTATATGGAAGCTGAAGAAATGGCTCGGTTTTGGAATGGAGACGAGGTTAACCCAAAGCCTCAAGCACACGGATCAGTACCTAACCAACATCATCGAGACACGTAGACTCCAACTATCCATATCCAACGAGACCCCTCACGACGACCTATTGTCAAGGTTCATGAAAAAGAAGGAATCCTACTCCGACGCGTTCCTCCAACACGTGGCACTCAACTTCATCCTAGCCGGACGCGACACGTCATCGGTCGCCCTCACCTGGTTCTTCCACCTACTAACCAAAAACCCAACAGTGGAAGAAAAAATCCTCATCGAAATATGCACCGTCCTACTAAACACGCGTGGCAGAGACACGTCCACGTGGACCAACCAGCCGTTCCGGTTTGAAGAGCTGGACCAATTAATTTACCTCAAAGCCGCCTTGTCGGAGACTCTACGCCTCTACCCGTCGGTGCCACAAGATTCAAAATATGTCGTAAACGACGACGTTTTGCCCACCGGAGCTTTCCTTCCGGCGGGTTCTTCCGTTACATATTCGATTTATTCCATTGGACGAATGAAATTCATTTGGGGAGAGGATTGTTTGGAATTCAAACCGGAAAGATGGTTGGATTTAGATGGAAAGAAAATTGAGGTACAAAATGCTTATAAATTTGTTGCATTTAATGCTGGCCCAAGGACTTGTTTGGGTAAAGATTTGGCTTATTTGCAAATGAAGTCCATTGCGGCGGCGCTGCTGCTCCGGCACCGCCTTACGGTGGCGGCCGGCCACCCTGTGGAGCAAAAAATGTCGTTGACTTTGTTTATGAAACATGGGCTCAAGGTTTATTTGAGCCCAAGAGATTTGGGCTCTGTGGTGGAGACAATTGGCAAGACGGCGGCGGCCGCAAGTTGA | 1569 | 50.41 | MDAAVAAVMAAVAYLIWFLNIQRSMSGPRVWPLLGSLPGLIKNSHRMHDWIAENLRSTGGTYQTCTCAVPFLAKKQALVTVTCDAKNLEHILKTRFENYPKGPNWQAVFHDLLGDGIFNSDGDTWLFQRKAAALEFTTRTLRLAMARWVNRAIESRLCPILESAQRGAEPVDVQDLLLRLTFDNICGLTFGKDPQTLAHDFPENGFATAFDAATEATLCRFILPNFIWKLKKWLGFGMETRLTQSLKHTDQYLTNIIETRRLQLSISNETPHDDLLSRFMKKKESYSDAFLQHVALNFILAGRDTSSVALTWFFHLLTKNPTVEEKILIEICTVLLNTRGRDTSTWTNQPFRFEELDQLIYLKAALSETLRLYPSVPQDSKYVVNDDVLPTGAFLPAGSSVTYSIYSIGRMKFIWGEDCLEFKPERWLDLDGKKIEVQNAYKFVAFNAGPRTCLGKDLAYLQMKSIAAALLLRHRLTVAAGHPVEQKMSLTLFMKHGLKVYLSPRDLGSVVETIGKTAAAAS | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 6106634 | 6108583 | + | Sed0005036.1 | Sed05g0770 | 713396 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g0770 | 522 | FunFam | Cytochrome P450 | 19 | 508 | - | - | |
| Sed05g0770 | 522 | SUPERFAMILY | Cytochrome P450 | 22 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | Gene3D | Cytochrome P450 | 21 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | Pfam | Cytochrome P450 | 26 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | CDD | CYP86A | 65 | 498 | - | - | |
| Sed05g0770 | 522 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PRINTS | P450 superfamily signature | 364 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PANTHER | CYTOCHROME P450 | 17 | 498 | - | - | |
| Sed05g0770 | 522 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PRINTS | E-class P450 group I signature | 310 | 336 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PRINTS | E-class P450 group I signature | 363 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | PRINTS | E-class P450 group I signature | 290 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0770 | 522 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1153 | Sed-Chr1:8561665 | Sed05g0770 | Sed-Chr5:6106634 | 9.00E-190 | dispersed | |
| Sed05g0770 | Sed-Chr5:6106634 | Sed09g0050 | Sed-Chr9:409158 | 1.30E-217 | dispersed | |
| Sed05g0770 | Sed-Chr5:6106634 | Sed04g2239 | Sed-Chr4:36137951 | 5.80E-221 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g0770 | K15398 | - | csv:101216733 | 852.818 |