Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0771 ATGGAGGGAAAGGAAGAGGACGTGAAGCTGGGAGCGAACAAGTACGCGGAACGGCAGCCGATCGGCACGTCGGCGCAGACGGACAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGCCCGGCGAGCTCTCCTCCTGGTCCTTCTACCGCGCCGGGATCGCCGAGTTCGTCGCCACTTTCCTCTTCCTCTACATCACCATCCTGACCGTCATGGGCGTCAGCCGCGCTCCCTCTAAATGCACCACCGTCGGCATTCAGGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTTTACTGCACCGCCGGCATCTCTGGCGGGCACATTAATCCAGCAGTGACCTTCGGGCTATTCTTGGCGAGAAAGCTGTCGCTCACCAGAGCCTTGTTCTACATCATAATGCAGTGCTTAGGAGCCATCTGCGGTGCTGGCGTGTCCATCTACGAGCAGAAGTTCGGTGGCGCCAACATTGTCGCCCCTGGCTACACCAAGGGCAGCGGCCTTGGAGCTGAGATCGTCGGCACCTTCGTTCTCGTCTACACCGTCTTCTCTGCCACCGATGCCAAGAGAAATGCTAGAGATTCTCATGTCCCTCTTTTGGCTCCTCTGCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGCCACCATTCCCATAACTGGCACCGGTATCAACCCGGCCAGGAGTCTTGGAGCTGCTATCATCTACAACAGGCAGCACGCTTGGGATGACCATTGGATCTTCTGGTTGGGACCATTCATTGGAGCTGCTCTTGCTGCTATGTACCACCAGATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA 843 57.77 MEGKEEDVKLGANKYAERQPIGTSAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVSIYEQKFGGANIVAPGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWLGPFIGAALAAMYHQIIIRAIPFKARA 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6115347 6118233 - Sed0012240.1 Sed05g0771 713397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0771 280 FunFam Probable aquaporin PIP1-2 37 280 - -
Sed05g0771 280 Pfam Major intrinsic protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 SUPERFAMILY Aquaporin-like 45 272 IPR023271 -
Sed05g0771 280 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Sed05g0771 280 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Sed05g0771 280 MobiDBLite consensus disorder prediction 1 34 - -
Sed05g0771 280 NCBIfam MIP family channel protein 56 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g0771 280 Gene3D Glycerol uptake facilitator protein. 37 278 IPR023271 -
Sed05g0771 280 CDD MIP 52 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0771 Sed-Chr5:6115347 Sed07g2554 Sed-Chr7:41078724 2.90E-134 dispersed
Sed05g0771 Sed-Chr5:6115347 Sed05g2850 Sed-Chr5:39649883 4.40E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0771 K09872 - csv:101217440 525.013