Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0771 | ATGGAGGGAAAGGAAGAGGACGTGAAGCTGGGAGCGAACAAGTACGCGGAACGGCAGCCGATCGGCACGTCGGCGCAGACGGACAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGCCCGGCGAGCTCTCCTCCTGGTCCTTCTACCGCGCCGGGATCGCCGAGTTCGTCGCCACTTTCCTCTTCCTCTACATCACCATCCTGACCGTCATGGGCGTCAGCCGCGCTCCCTCTAAATGCACCACCGTCGGCATTCAGGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTTTACTGCACCGCCGGCATCTCTGGCGGGCACATTAATCCAGCAGTGACCTTCGGGCTATTCTTGGCGAGAAAGCTGTCGCTCACCAGAGCCTTGTTCTACATCATAATGCAGTGCTTAGGAGCCATCTGCGGTGCTGGCGTGTCCATCTACGAGCAGAAGTTCGGTGGCGCCAACATTGTCGCCCCTGGCTACACCAAGGGCAGCGGCCTTGGAGCTGAGATCGTCGGCACCTTCGTTCTCGTCTACACCGTCTTCTCTGCCACCGATGCCAAGAGAAATGCTAGAGATTCTCATGTCCCTCTTTTGGCTCCTCTGCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGCCACCATTCCCATAACTGGCACCGGTATCAACCCGGCCAGGAGTCTTGGAGCTGCTATCATCTACAACAGGCAGCACGCTTGGGATGACCATTGGATCTTCTGGTTGGGACCATTCATTGGAGCTGCTCTTGCTGCTATGTACCACCAGATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA | 843 | 57.77 | MEGKEEDVKLGANKYAERQPIGTSAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVSIYEQKFGGANIVAPGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWLGPFIGAALAAMYHQIIIRAIPFKARA | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6115347 | 6118233 | - | Sed0012240.1 | Sed05g0771 | 713397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0771 | 280 | FunFam | Probable aquaporin PIP1-2 | 37 | 280 | - | - | |
Sed05g0771 | 280 | Pfam | Major intrinsic protein | 44 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | SUPERFAMILY | Aquaporin-like | 45 | 272 | IPR023271 | - | |
Sed05g0771 | 280 | ProSitePatterns | MIP family signature. | 112 | 120 | IPR022357 | - | |
Sed05g0771 | 280 | PRINTS | Major intrinsic protein family signature | 131 | 150 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | PRINTS | Major intrinsic protein family signature | 94 | 118 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | PRINTS | Major intrinsic protein family signature | 174 | 192 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | PRINTS | Major intrinsic protein family signature | 250 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | PRINTS | Major intrinsic protein family signature | 210 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | PRINTS | Major intrinsic protein family signature | 52 | 71 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 5 | 276 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) | |
Sed05g0771 | 280 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Sed05g0771 | 280 | NCBIfam | MIP family channel protein | 56 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g0771 | 280 | Gene3D | Glycerol uptake facilitator protein. | 37 | 278 | IPR023271 | - | |
Sed05g0771 | 280 | CDD | MIP | 52 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0771 | Sed-Chr5:6115347 | Sed07g2554 | Sed-Chr7:41078724 | 2.90E-134 | dispersed | |
Sed05g0771 | Sed-Chr5:6115347 | Sed05g2850 | Sed-Chr5:39649883 | 4.40E-106 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0771 | K09872 | - | csv:101217440 | 525.013 |