Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0790 ATGTGTCAAGGAAACTGTGAAATATTTGAGGAAATGAACAAACAGAACAAGCCTTGTGTAAGCAATAAGCCATCAGTATATTACTGGCGGAGACCAGATAAGAGGTCGTCATCTGAGCTGGCTGATTTTGTTATTGAAAACGATACCCCCAACAGTTGTTATGCCAAACACAGTAAGGATAGCAGTACTAATGAGCCGAAGTCTTCTGAGATATTGAGCACAGCTCAGGTCATTTCAATTTTTGGCCAAGTATTGAATCTTGCTAGTCGTCCTCTTTCCTTTTTCCAACCGAGGAGGATCTTAAACCAAGAAAATGATGATTCCAATGAGGTTTCCTTCAATAGTGTGGTTGAAGTTGATGGCAAAGCAGTTACCTCACCTGAAATAAAAAAATTCTGTGTTGATAGAAGGACTGATGGCCAATGTTCTCCTATGGTCCAGCCTACTTTGGGCTTGGATTGTTTGACGGTAACTCAGAAGATGTCTTTGTTAGAACCTTGTAAATATCATTCCATGTCATCATTTTGGAGTCTACGACATGGTGGTAGAGACATGTCGGCTAAATTGTGGAAAGGAAAATGCTTTACTAGTGTACAAAACTTGCACGACATGAGGAAGATATATGGATGGATGAACCATATATGTCATACTGAAGCATGCTACTCTGTGAAAGTCGTTAATGCCGAAAGCATGAAAACCAATGCATTCAAGGCTAGAGGTGGTCTGAATGAATCAGGAGGCTGCATTTCAGGAGATTCAAGTTTTCTTGTTCATGAGTTGATCAATGAAACTTCAAAAAGTGCTCCGATGCTTCAATTAATCAACTTATCATCGCTGTTCATCCGAAAGTTGGAGATAAAGATGGTGGAACATGTTTATATGGCTTCACGTATCCTTACATTTGTTCAAGATAACAAGGCCGATGGCAGTATTCTAGAAAGCCCAGATTCAGATATTGTGGCAGATCATTCACTACCTTCAAAAGATGGTGTATTAGACAATTTTGACTATGGGTGTAAGACTAATAGCAGTGAACAACATGAGAATAAAACCAAACAGTCTGACAAGCTCATTGTTGAAAATCAGTACAATAGAGAGGATTGCTCATTGACACGTGAAAATTTTTGTTACACTATTGCTAAGCAAGAACATGCCTTTGCCGGTGCATTGGCTGGTATACTTGTCAGTGTTTGTCTACATCCTGTTGATACAGTCAAAACAGTGGTTCAGTCTTATCATGCAGAACGGAAGTCGCTCAGTTACATTGGAAAATCAATTGTCTCTGATCGAGGTTTATGTGGACTTTATCGTGGAATCTCCACCAACATTGCTTCTTCAGCTCCAATATCTGCCATCTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCACTTTTCCAAGAGGAGTATCGCTCTGTTGTTCATTGTACGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTATTTTTACCCCAAGTGAGCGCATAAAACAGCAGATGCAAGTTAGTGCACACTACCATAACTGCTGGAATGCCTTTGTTGGCGTTGTTGCAAAGGGTGGATTGCGTGGATTATATACAGGATGGGGAGCTGTTCTTTGCAGAAATGTACCACACTCCATTATCAAGTTCTATACATATGAAAGTTTGAAAGGACTGATGAAACCTAATGCTCAGCAAACTACTTCACAAACGTTAGTATGTGGAGGAGTAGCTGGATCTACTGCGGCTTTATTTACCACTCCTTTTGATGTTGTAAAGACAAGATTGCAAACACAGATACCTGGATCTCTGAGCCCATATAAAAGTGTAATTCAAGCACTCTATGAAATAGGCAACAAAGAAGGTCTAAAAGGACTCTATAGGTATGCTTTGTTCCGACATATCTTCTCTCTGAATCTTTCATCAACTGTAGAATTTCCATTACTGGTCGCCAAACGAGAGCTCATCTCAACTGGCATGGTGTATGACCTGATAACCAAGAGGTTACAAGTTTGA 2004 39.97 MCQGNCEIFEEMNKQNKPCVSNKPSVYYWRRPDKRSSSELADFVIENDTPNSCYAKHSKDSSTNEPKSSEILSTAQVISIFGQVLNLASRPLSFFQPRRILNQENDDSNEVSFNSVVEVDGKAVTSPEIKKFCVDRRTDGQCSPMVQPTLGLDCLTVTQKMSLLEPCKYHSMSSFWSLRHGGRDMSAKLWKGKCFTSVQNLHDMRKIYGWMNHICHTEACYSVKVVNAESMKTNAFKARGGLNESGGCISGDSSFLVHELINETSKSAPMLQLINLSSLFIRKLEIKMVEHVYMASRILTFVQDNKADGSILESPDSDIVADHSLPSKDGVLDNFDYGCKTNSSEQHENKTKQSDKLIVENQYNREDCSLTRENFCYTIAKQEHAFAGALAGILVSVCLHPVDTVKTVVQSYHAERKSLSYIGKSIVSDRGLCGLYRGISTNIASSAPISAIYTFTYESVKGALLPLFQEEYRSVVHCTAGGCASIATSFIFTPSERIKQQMQVSAHYHNCWNAFVGVVAKGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLMKPNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGNKEGLKGLYRYALFRHIFSLNLSSTVEFPLLVAKRELISTGMVYDLITKRLQV 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6206303 6215338 + Sed0006846.4 Sed05g0790 713416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0790 667 Pfam Mitochondrial carrier protein 473 557 IPR018108 -
Sed05g0790 667 Pfam Mitochondrial carrier protein 562 624 IPR018108 -
Sed05g0790 667 Pfam Mitochondrial carrier protein 383 464 IPR018108 -
Sed05g0790 667 FunFam Mitochondrial substrate carrier protein-like 358 506 - -
Sed05g0790 667 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 339 631 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Sed05g0790 667 SUPERFAMILY Mitochondrial carrier 383 624 IPR023395 -
Sed05g0790 667 ProSiteProfiles Solute carrier (Solcar) repeat profile. 472 555 IPR018108 -
Sed05g0790 667 ProSiteProfiles Solute carrier (Solcar) repeat profile. 379 463 IPR018108 -
Sed05g0790 667 ProSiteProfiles Solute carrier (Solcar) repeat profile. 562 651 IPR018108 -
Sed05g0790 667 Gene3D Mitochondrial carrier domain 472 645 IPR023395 -
Sed05g0790 667 Gene3D Mitochondrial carrier domain 345 471 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0788 Sed-Chr5:6206303 Sed05g0790 Sed-Chr5:6206303 0.00E+00 dispersed
Sed05g0790 Sed-Chr5:6206303 Sed11g1334 Sed-Chr11:29090661 2.40E-30 dispersed
Sed05g0789 Sed-Chr5:6206303 Sed05g0790 Sed-Chr5:6206303 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g594 . . . . . . . . . . . . . . Sed05g0790 . . Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 . . . . . . . . . Cone11ag1032 . Lsi08g00675 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00806 Cam08g1239 Cec08g0824 Cco08g0935 Clacu08g0942 . Cre08g0743 . . . .
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37