Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0800 ATGGATGAAAGGGAAGGAATGGCAATGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGGGTTGGTGGTGGCTCTGGATCAGGGCTGCCTTCGGCCGGATCTCACGCCTCTCCGGTATTCCGGCCAATGGCGAACCAAGGTGTTTTGGCTCACTCAAATCTCAGAGGCAACTCAGTTGCATCAACTTATGCTGTTGAGCCATCACACTCCAATTATCTTCATGGGATCAGTATGAATGTCTCACCTGGAGTGAATTCTAGTGAGCCTGTAAAGAAGAAAAGGGGCAGGCCAAGGAAATATGCTCCAGATGGGCAGGTCTCATTGGGTCTGTCTCCCATGTCTGCTAGTTCTAAGCTCACTCCAGGATCGAATTCGTCGACCGCAAGTCGACGTAGAGGGCGGCCGCCTGGTTCTGGAAGGAAACAACAATTAGCCCTTCTTGGCGAATGGATGAACAATTCAGCTGGACTAGCTTTTTCCCCACATGTCATTCATGTTGAAGCTGGAGAAGATATTGTTGCAAAAGTATTGTCTTTTGCACAGCAAAGGCCGAGGGCTGTTTGCATCTTGTCAGGCAATGGTACTGTTTCTTCTGTAACACTGCGGCAGCCTGCATCGACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGCTTGTCTGGTTCTTATTTGGTAGCTGAAGATGGTGGTCCCCGAAATAGGACAGGCGGTATCAGTGTTTCTCTCTCTAGTCCGGATGGACATGTCATTGGCGGTGGCGTTGCGGTTCTTATGGCTGCTGGCCCTGTTCAGGTAGTTGTTTCTAGTTTTGTTTATGGTGCAAAGATCAAGAACAAGCAGGTGGCTGGTCCGAAAAGCAAAGATAGTTCCGAAAATGACCACCATGATAATTTGGTTTCACCGTCAAATGCTCTTCCTGCCCAAACCTACAATCCATCTCCAATTGGTGTTTGGCCTGGTTCCCGTTCGGTCGATGTGAGAAACCCCCATACTGGAATCGACTTGACGCGAGGATGA 1035 49.18 MDEREGMAMSGGSASYYIHRGGGVGGGSGSGLPSAGSHASPVFRPMANQGVLAHSNLRGNSVASTYAVEPSHSNYLHGISMNVSPGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSASSKLTPGSNSSTASRRRGRPPGSGRKQQLALLGEWMNNSAGLAFSPHVIHVEAGEDIVAKVLSFAQQRPRAVCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRNRTGGISVSLSSPDGHVIGGGVAVLMAAGPVQVVVSSFVYGAKIKNKQVAGPKSKDSSENDHHDNLVSPSNALPAQTYNPSPIGVWPGSRSVDVRNPHTGIDLTRG 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6287196 6292362 + Sed0015615.1 Sed05g0800 713426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0800 344 MobiDBLite consensus disorder prediction 287 301 - -
Sed05g0800 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 297 IPR039605 GO:0003680(InterPro)
Sed05g0800 344 MobiDBLite consensus disorder prediction 287 344 - -
Sed05g0800 344 Gene3D - 164 290 - -
Sed05g0800 344 ProSiteProfiles PPC domain profile profile. 159 301 IPR005175 -
Sed05g0800 344 MobiDBLite consensus disorder prediction 19 38 - -
Sed05g0800 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 277 - -
Sed05g0800 344 MobiDBLite consensus disorder prediction 302 322 - -
Sed05g0800 344 MobiDBLite consensus disorder prediction 112 135 - -
Sed05g0800 344 MobiDBLite consensus disorder prediction 79 144 - -
Sed05g0800 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 276 IPR005175 -
Sed05g0800 344 CDD DUF296 164 276 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2231 Sed-Chr4:36068528 Sed05g0800 Sed-Chr5:6287196 3.60E-75 dispersed
Sed05g0800 Sed-Chr5:6287196 Sed09g0064 Sed-Chr9:499521 9.90E-76 dispersed
Sed01g3886 Sed-Chr1:68107704 Sed05g0800 Sed-Chr5:6287196 1.40E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0800 - - - 0.0