Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0834 ATGGCTGACCAAAATCTTCCTATTAATGAGCACCAAATAGACCATTCTGCTCTTCAGCTTCCTCCCTCAAATCCAAATCAAAAGCCAAACCCCCAATTGGGAGAAGTAATTAATTTGGTTAAAAAGCTACCACAACCTCCTTCTTCATCATCATCCATGGCTTCTTTAACTTCCTCTTCCTCTTCTTCTTCATCCAAGAAGCAATCTTTGTATAGAGGAATCCGATGCCGGAGCGGGAAATGGGTGTCGGAGATTCGGGAGCCACGTAAGACGACGCGCATATGGCTTGGGACGTTTCCCACTGCCGAGATGGCTGCTGCTGCTTACGATGTTGCCACCCTCGCCCTTCGAGGCGAGGATGCTGTCCTCAACTTCCCCTCCTCCATTGGCTCATACCCAGTTCCCGCATCGACCTCCCCGGTCGATATACGCACGGCTGCCTCCACTGCTGCCAATGCGCTGAAAAAGGTTAAGGCGTGTAGTGGCGATATTGAAGATAGGACAATCGGTGGTATAGACGATAGCGGTAATACCGCGTTGTTGGGGATAGATGAGTTTGTGGATGAGGAGGAAATTTTTGGAATGCCGGGTTTGCTGGCGGACATGGCGGAGGGGATGATGGTGTCGCCGCCAAGAATGATCTCGCCGCCTCGGTCCGATGGCACGATGGAAAGTTCTGATGAAATGGAGAGTTTATGGAACTACTCTCGATGA 714 50.56 MADQNLPINEHQIDHSALQLPPSNPNQKPNPQLGEVINLVKKLPQPPSSSSSMASLTSSSSSSSSKKQSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVATLALRGEDAVLNFPSSIGSYPVPASTSPVDIRTAASTAANALKKVKACSGDIEDRTIGGIDDSGNTALLGIDEFVDEEEIFGMPGLLADMAEGMMVSPPRMISPPRSDGTMESSDEMESLWNYSR 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6581566 6582677 + Sed0010473.1 Sed05g0834 713460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0834 237 MobiDBLite consensus disorder prediction 219 237 - -
Sed05g0834 237 MobiDBLite consensus disorder prediction 1 33 - -
Sed05g0834 237 Pfam AP2 domain 70 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0834 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 61 235 IPR045277 GO:0003700(InterPro)
Sed05g0834 237 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0834 237 MobiDBLite consensus disorder prediction 1 71 - -
Sed05g0834 237 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0834 237 FunFam Ethylene-responsive transcription factor 2 69 127 - -
Sed05g0834 237 MobiDBLite consensus disorder prediction 214 237 - -
Sed05g0834 237 SMART rav1_2 70 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0834 237 MobiDBLite consensus disorder prediction 43 71 - -
Sed05g0834 237 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677(InterPro)
Sed05g0834 237 ProSiteProfiles AP2/ERF domain profile. 70 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0556 Sed-Chr2:43184175 Sed05g0834 Sed-Chr5:6581566 7.20E-35 dispersed
Sed05g0834 Sed-Chr5:6581566 Sed08g2857 Sed-Chr8:39791832 4.60E-40 dispersed
Sed05g0834 Sed-Chr5:6581566 Sed05g0835 Sed-Chr5:6619376 9.00E-28 tandem
Sed01g3918 Sed-Chr1:68377726 Sed05g0834 Sed-Chr5:6581566 9.10E-66 wgd
Sed13g0173 Sed-Chr13:1119894 Sed05g0834 Sed-Chr5:6581566 2.30E-30 wgd
Sed05g0834 Sed-Chr5:6581566 Sed07g1072 Sed-Chr7:7742435 5.40E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38476 PF00847 AP2 3.90E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0834 - - - 0.0