Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0835 ATGGATTTTTTCGGCCCATTTTCTGACCCAATTCCTTATTATGGAAATTGTAATTACAAATCAGAATCGTCCTCGTTGTCAGACGCCGGAACGCCGCCGCAGGCGGTGGCTAACTCCGACGAGGAAGTGATACTGGCGTCGAACCGGCCGAAGCGGCGGGCCGGTCGGCGGGTTTTTAAGGAGACGAGGCATCCGGTTTACAGAGGGGTTCGGCGGAGGAATAACGACAAATGGGTTTGTGAACTTAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCCACGGCGGAAATGGCGGCGCGTGCACACGACGTGGCGGCACTCGCCTTGAGAGGGAAGTCTGCCTGTCTCAATTTCGCTGACTCGGCTTGCCGGTTTCCGATTCCGGCGAGCGATGACCCGTCGGAGATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGGAGAGTAATGCGGGTCCGGTGGAGGACGACGTCGTTTTGAGTCAGCCCACGGCGGCGCGTGATCGAATGCTGGATTGTGTTGAGGACGAAGCTTTGTCGCCGATGCTGCTTGCCAGCATGGCGGAGGGACTTCTTCTTTCTCCTCCTTCTTTTCGTGTTCGTGATGACGTGGAGTGGGATGACATGGACGTGAGTCATGACGTGTCATTGTGGAGCTTTTAG 672 56.99 MDFFGPFSDPIPYYGNCNYKSESSSLSDAGTPPQAVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSACRFPIPASDDPSEIREAAARAANEESNAGPVEDDVVLSQPTAARDRMLDCVEDEALSPMLLASMAEGLLLSPPSFRVRDDVEWDDMDVSHDVSLWSF 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6619376 6620509 + Sed0025978.1 Sed05g0835 713461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0835 223 CDD AP2 67 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0835 223 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Sed05g0835 223 Pfam AP2 domain 65 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0835 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 223 IPR045277 GO:0003700(InterPro)
Sed05g0835 223 SMART rav1_2 66 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0835 223 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0835 223 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677(InterPro)
Sed05g0835 223 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0835 223 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0835 223 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0835 Sed-Chr5:6619376 Sed13g0173 Sed-Chr13:1119894 3.80E-52 dispersed
Sed05g0834 Sed-Chr5:6581566 Sed05g0835 Sed-Chr5:6619376 9.00E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38477 PF00847 AP2 1.50E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0835 - - - 0.0