Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0847 ATGCAAGATTCCGGGTTGGGAATGGCCGGCGATTCTACCGGCGGTGTTTCGGTCAACGGCGACGGCCAACTCAAAGCGGAGATCGCCACTCATCCGATGTATGAGCAGCTCTTGTCCGCTCACGTTGCCTGTCTTCGTGTTGCCACTCCCATTGATCAGCTTCCAATGATCGATGCTCAGTTGGCTCAAGCGCACCATATCTTGCGCTCTTATGCGTCTCACCCTCATGCCCTTTCGTTATCGCCTCATGACCGCCAAGAACTCGACAATTTTCTTGCACAGTATATGATCGTTTTGTGCTCTTTTAAAGAGCAGCTTCAGCAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCTTGCCGTGAAATTGAAAATACTTTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACTGGTGCAACAATGTCAGACGACGAAGATGACATTCCGATGGACTTCTCGCTTGACCAATCCAGTGCCGATACACACGACATGATGGGGTTCGGGCCTTTGCTTCCAACTGAATCTGAAAGATCATTGATGGAGAGGGTTCGGCAGGAACTAAAAATTGAGCTAAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAGATATTAAGAAAAAGAAGGGCAGGGAAGTTACCTGGTGATACAACCACAGTTTTGAAAAACTGGTGGCAGCAACATTCCAAGTGGCCCTACCCAACTGAAGACGATAAGGCGAAGCTCGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAATCAAAGGAAGAGAAACTGGCATAGCAACTCTCAATCAGTAACATCCTTGAAGTCCAAGCGCAAGCGATAA 861 47.97 MQDSGLGMAGDSTGGVSVNGDGQLKAEIATHPMYEQLLSAHVACLRVATPIDQLPMIDAQLAQAHHILRSYASHPHALSLSPHDRQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSSADTHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6729889 6734478 - Sed0006996.1 Sed05g0847 713473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0847 286 CDD homeodomain 212 273 IPR001356 GO:0003677(InterPro)
Sed05g0847 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 272 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g0847 286 SMART KNOX2_2 78 133 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g0847 286 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g0847 286 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g0847 286 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677(InterPro)
Sed05g0847 286 Gene3D - 208 282 - -
Sed05g0847 286 SMART KNOX1_2 22 66 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g0847 286 FunFam homeobox protein knotted-1-like 3 isoform X1 210 271 - -
Sed05g0847 286 SMART HOX_1 211 276 IPR001356 GO:0003677(InterPro)
Sed05g0847 286 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677(InterPro)
Sed05g0847 286 Pfam KNOX2 domain 82 132 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g0847 286 SUPERFAMILY Homeodomain-like 211 276 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0847 Sed-Chr5:6729889 Sed13g1994 Sed-Chr13:24792996 7.60E-106 dispersed
Sed05g0847 Sed-Chr5:6729889 Sed05g0848 Sed-Chr5:6729889 5.80E-106 tandem
Sed01g3929 Sed-Chr1:68451195 Sed05g0847 Sed-Chr5:6729889 7.80E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38478 PF03791 KNOX2 3.50E-18 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0847 - - - 0.0