Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0848 ATGCAAGATTCCGGGTTGGGAATGGCCGGCGATTCTACCGGCGGTGTTTCGGTCAACGGCGACGGCCAACTCAAAGCGGAGATCGCCACTCATCCGATGTATGAGCAGCTCTTGTCCGCTCACGTTGCCTGTCTTCGTGTTGCCACTCCCATTGATCAGCTTCCAATGATCGATGCTCAGTTGGCTCAAGCGCACCATATCTTGCGCTCTTATGCGTCTCACCCTCATGCCCTTTCGTTATCGCCTCATGACCGCCAAGAACTCGACAATTTTCTTGCACAGTATATGATCGTTTTGTGCTCTTTTAAAGAGCAGCTTCAGCAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCTTGCCGTGAAATTGAAAATACTTTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACTGGTGCAACAATGTCAGACGACGAAGATGACATTCCGATGGACTTCTCGCTTGACCAATCCAGTGCCGATACACACGACATGATGGGGTTCGGGCCTTTGCTTCCAACTGAATCTGAAAGATCATTGATGGAGAGGGTTCGGCAGGAACTAAAAATTGAGCTAAAACAGGTTCCTTTTATATGGTCTAAAAAAGCTTCCTATTACATTGCAAATTAA 636 48.11 MQDSGLGMAGDSTGGVSVNGDGQLKAEIATHPMYEQLLSAHVACLRVATPIDQLPMIDAQLAQAHHILRSYASHPHALSLSPHDRQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSSADTHDMMGFGPLLPTESERSLMERVRQELKIELKQVPFIWSKKASYYIAN 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6729889 6734478 - Sed0006996.2 Sed05g0848 713474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0848 211 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g0848 211 SMART KNOX2_2 78 133 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g0848 211 Pfam KNOX2 domain 82 132 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g0848 211 SMART KNOX1_2 22 66 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3930 Sed-Chr1:68451195 Sed05g0848 Sed-Chr5:6729889 1.00E-91 dispersed
Sed05g0848 Sed-Chr5:6729889 Sed13g1994 Sed-Chr13:24792996 1.00E-59 dispersed
Sed05g0847 Sed-Chr5:6729889 Sed05g0848 Sed-Chr5:6729889 5.80E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0848 - - - 0.0