Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0850 ATGGTGAGAGGAAAAACTGAAATGAAGCGCATAGAGAATGCAACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGGCTGCTCAAGAAAGCCTTTGAGCTTTCAGTTCTGTGTGATGCTGAACTTGCACTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATAATGTCTAGTAATAACCAAGCTTTAGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTGCAACACCTTGAAGTTTGTAAAAGAAAACTGATGGGAGATGGCTTGGATTTGTGTTCCATTGAAGAGTTGCAGCAGCTTGAAAGACAAATTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGTTTCAATTGCTGAAGGAAGAAGTTATGAAGCTGAAGGAAAAGGAGAAAATGTTGCTAGAAGAAAATGCAGCCCTGCTGATGAAGGTTGGAAGTGAATCATTAAAAAAACCAGAAACCAACCAGAGATCAGAATCAAGCCACCAAGACACAATGGATGTGGAAACTGATCTGTTCATAGGACGACCAGAAAGAACCAGAAATGGCTCCCGGTAG 642 40.19 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEIMSSNNQALEDVQLEKEYDSFSMTKKLQHLEVCKRKLMGDGLDLCSIEELQQLERQIERSLSKIRSRKFQLLKEEVMKLKEKEKMLLEENAALLMKVGSESLKKPETNQRSESSHQDTMDVETDLFIGRPERTRNGSR 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6774610 6780616 + Sed0019121.1 Sed05g0850 713476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0850 213 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g0850 213 MobiDBLite consensus disorder prediction 178 213 - -
Sed05g0850 213 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed05g0850 213 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Sed05g0850 213 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g0850 213 Coils Coil 122 142 - -
Sed05g0850 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 MobiDBLite consensus disorder prediction 173 213 - -
Sed05g0850 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g0850 213 Coils Coil 144 164 - -
Sed05g0850 213 Pfam K-box region 89 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3934 Sed-Chr1:68479941 Sed05g0850 Sed-Chr5:6774610 6.30E-86 dispersed
Sed01g3935 Sed-Chr1:68482533 Sed05g0850 Sed-Chr5:6774610 5.70E-52 dispersed
Sed05g0850 Sed-Chr5:6774610 Sed09g0102 Sed-Chr9:760950 6.00E-47 dispersed
Sed01g3933 Sed-Chr1:68479941 Sed05g0850 Sed-Chr5:6774610 6.30E-86 wgd
Sed12g0222 Sed-Chr12:1232327 Sed05g0850 Sed-Chr5:6774610 1.10E-40 wgd
Sed13g0184 Sed-Chr13:1200419 Sed05g0850 Sed-Chr5:6774610 2.00E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38479 PF01486 K-box 8.70E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0850 - - - 0.0