Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0853 ATGGCTTCTTTTTCAGCCTCCAACTTGTTGCTTGTGGCATTGGTTTTGACTGTGTTTGGCCGATCGACACTGGCTGTGTTCCAACCTAGCACGTGGAAACCCGCTCATGCCACATTTTATGGCGACGAAACTGCATCCGCCACCATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGATACGGAACAGATACAGTCGCATTGAGCTCGACACTATTCAACAACGGCTACGCATGCGGGACATGCTTCCAGCTGAAATGCGTGCAGTCAAAGGCATGCTACAAGAACGTGCAGTTCACCACAGTGACAGCAACAAACCTATGCCCACCGAACTGGTCGCAGGACTCGAACGCGGGTGGGTGGTGCAACCCACCACGCGTCCACTTCGACATGGCGAAGCCTGCGTTCATGAAGATCGCCGAGGTTCCATGCGCGAGAAAAGGAGGTGTTCGATTCAGCTTCCAAGGAAACGGGTACTGGCTGTTGGTGTACGTGATGAACGTGGGCGGGGGCGGGGATGTGTATTCGATGGCAGTGAAAGGAACCAAAACGGGTTGGATTACAATGAGCCATAATTGGGGAGCTTCATATCAAGCCTTTTCTTCTTTGGGTGGTCAAGGACTTTCATTTAGAATCACTTCTTACACATCCAAAGAAACCATTACCCTTTGGAATGTTGTTCCTTCTAACTGGCAAGTTGGGTTGACTTACAATACGAATCTCAACTTCCGTTGA 741 50.2 MASFSASNLLLVALVLTVFGRSTLAVFQPSTWKPAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQLKCVQSKACYKNVQFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAEVPCARKGGVRFSFQGNGYWLLVYVMNVGGGGDVYSMAVKGTKTGWITMSHNWGASYQAFSSLGGQGLSFRITSYTSKETITLWNVVPSNWQVGLTYNTNLNFR 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6796719 6798177 - Sed0022083.1 Sed05g0853 713479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0853 246 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Sed05g0853 246 SUPERFAMILY Barwin-like endoglucanases 31 169 IPR036908 -
Sed05g0853 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 241 IPR007117 -
Sed05g0853 246 SMART dpbb_1 67 156 IPR007112 -
Sed05g0853 246 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Sed05g0853 246 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Sed05g0853 246 PRINTS Expansin signature 162 183 IPR002963 GO:0009664(InterPro)
Sed05g0853 246 PRINTS Expansin signature 150 162 IPR002963 GO:0009664(InterPro)
Sed05g0853 246 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Sed05g0853 246 Gene3D - 18 154 IPR036908 -
Sed05g0853 246 CDD DPBB_EXPA_N 32 152 - -
Sed05g0853 246 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576(InterPro)
Sed05g0853 246 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Sed05g0853 246 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Sed05g0853 246 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Sed05g0853 246 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Sed05g0853 246 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Sed05g0853 246 PANTHER EXPANSIN-A15 12 240 IPR002963 GO:0009664(InterPro)
Sed05g0853 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 157 IPR007112 -
Sed05g0853 246 Gene3D - 155 246 IPR036749 -
Sed05g0853 246 Pfam Expansin C-terminal domain 152 230 IPR007117 -
Sed05g0853 246 Pfam Lytic transglycolase 67 151 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1296 Sed-Chr3:8275874 Sed05g0853 Sed-Chr5:6796719 1.20E-108 dispersed
Sed05g0853 Sed-Chr5:6796719 Sed07g2495 Sed-Chr7:40621356 3.20E-68 dispersed
Sed05g0853 Sed-Chr5:6796719 Sed05g2978 Sed-Chr5:40441191 3.70E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0853 - - - 0.0