Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0860 ATGGATACTCACTCTCTCCCCCCTCCTTTCCACACTAGAGATTTCCACCAATTCCACCACCACAACAACAACAACAACAACAATTCCGAGGAGGAGCACAGCGCCACCACCACCCGTTTGAAACGGGATCGTGACGAAGACGACAACAACAACAACAACAACAACAACAACAACAACTCTGGTGAAGATGTTGGACCCGACGGAGAGATCACTCGTCGACCCAGAGGAAGGCCCGCCGGGTCCAAGAACAAACCCAAACCACCCATTATTATAACTCGCGACAGCGCCAATGCGCTTAGGACTCATGTTATTGAGGTGACCGACGGGTGCGACATCGTCGACAGCATCTCCACCTTCGCCCGCCGCCGCCAGCGCGGCCTGTGCATTATGAGCGGTACCGGCTCCGTCACCAACGTCACCCTCCGCCAACCCGCTTCCCCCGGCGCCATCGTCAACTTACACGGTCGCTTCGACATCTTGTCCCTCGCCGGCTCCTTCCTCCCTCCCCCGGCCCCTCCCGCCGCCACCAGTTTGACCATTTACCTCGCCGGCGGGCAGGGTCAAGTCGTCGGCGGGAGCGTCGTCGGGACTTTGATCGCCGCGGGCCCCGTCGTCATCATGGCTGCCTCCTTTAGCAACGCCGCTTACGAGCGGCTGCCGTTGGAGGACGAAGACCCGCCGCCGATGCCCGGCGGCGCCGGAATTGGCTCTCCGGATGAAGTTGGGCAGTCACAAACGGCGCATCATCAACAACTTCTCGGCGACGGTAATGCGCCGTTATTTCAGGGTTTGCCTCCAAATCTTTTGAACTCAATTCAAATGCCGCCATCGGAAGCTGCTTATTGGGCTAATGCTCGACCGCCCTATTAA 870 58.62 MDTHSLPPPFHTRDFHQFHHHNNNNNNNSEEEHSATTTRLKRDRDEDDNNNNNNNNNNNSGEDVGPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSISTFARRRQRGLCIMSGTGSVTNVTLRQPASPGAIVNLHGRFDILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLIAAGPVVIMAASFSNAAYERLPLEDEDPPPMPGGAGIGSPDEVGQSQTAHHQQLLGDGNAPLFQGLPPNLLNSIQMPPSEAAYWANARPPY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6877873 6878742 - Sed0012531.1 Sed05g0860 713486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0860 289 CDD DUF296 100 167 IPR005175 -
Sed05g0860 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 289 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Sed05g0860 289 ProSiteProfiles PPC domain profile profile. 96 232 IPR005175 -
Sed05g0860 289 MobiDBLite consensus disorder prediction 1 91 - -
Sed05g0860 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
Sed05g0860 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 225 - -
Sed05g0860 289 Gene3D - 99 225 - -
Sed05g0860 289 MobiDBLite consensus disorder prediction 220 259 - -
Sed05g0860 289 MobiDBLite consensus disorder prediction 34 50 - -
Sed05g0860 289 PIRSF ESCAROLA 11 289 IPR014476 GO:0003680(InterPro)
Sed05g0860 289 FunFam AT-hook motif nuclear-localized protein 99 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1592 Sed-Chr2:51479887 Sed05g0860 Sed-Chr5:6877873 1.40E-66 dispersed
Sed04g2176 Sed-Chr4:35816589 Sed05g0860 Sed-Chr5:6877873 5.40E-72 dispersed
Sed05g0860 Sed-Chr5:6877873 Sed08g1584 Sed-Chr8:30942651 6.40E-68 dispersed
Sed05g0860 Sed-Chr5:6877873 Sed05g0863 Sed-Chr5:6958647 1.20E-18 proximal
Sed01g3955 Sed-Chr1:68666267 Sed05g0860 Sed-Chr5:6877873 4.30E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0860 - - - 0.0