Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0860 | ATGGATACTCACTCTCTCCCCCCTCCTTTCCACACTAGAGATTTCCACCAATTCCACCACCACAACAACAACAACAACAACAATTCCGAGGAGGAGCACAGCGCCACCACCACCCGTTTGAAACGGGATCGTGACGAAGACGACAACAACAACAACAACAACAACAACAACAACAACTCTGGTGAAGATGTTGGACCCGACGGAGAGATCACTCGTCGACCCAGAGGAAGGCCCGCCGGGTCCAAGAACAAACCCAAACCACCCATTATTATAACTCGCGACAGCGCCAATGCGCTTAGGACTCATGTTATTGAGGTGACCGACGGGTGCGACATCGTCGACAGCATCTCCACCTTCGCCCGCCGCCGCCAGCGCGGCCTGTGCATTATGAGCGGTACCGGCTCCGTCACCAACGTCACCCTCCGCCAACCCGCTTCCCCCGGCGCCATCGTCAACTTACACGGTCGCTTCGACATCTTGTCCCTCGCCGGCTCCTTCCTCCCTCCCCCGGCCCCTCCCGCCGCCACCAGTTTGACCATTTACCTCGCCGGCGGGCAGGGTCAAGTCGTCGGCGGGAGCGTCGTCGGGACTTTGATCGCCGCGGGCCCCGTCGTCATCATGGCTGCCTCCTTTAGCAACGCCGCTTACGAGCGGCTGCCGTTGGAGGACGAAGACCCGCCGCCGATGCCCGGCGGCGCCGGAATTGGCTCTCCGGATGAAGTTGGGCAGTCACAAACGGCGCATCATCAACAACTTCTCGGCGACGGTAATGCGCCGTTATTTCAGGGTTTGCCTCCAAATCTTTTGAACTCAATTCAAATGCCGCCATCGGAAGCTGCTTATTGGGCTAATGCTCGACCGCCCTATTAA | 870 | 58.62 | MDTHSLPPPFHTRDFHQFHHHNNNNNNNSEEEHSATTTRLKRDRDEDDNNNNNNNNNNNSGEDVGPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSISTFARRRQRGLCIMSGTGSVTNVTLRQPASPGAIVNLHGRFDILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLIAAGPVVIMAASFSNAAYERLPLEDEDPPPMPGGAGIGSPDEVGQSQTAHHQQLLGDGNAPLFQGLPPNLLNSIQMPPSEAAYWANARPPY | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6877873 | 6878742 | - | Sed0012531.1 | Sed05g0860 | 713486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0860 | 289 | CDD | DUF296 | 100 | 167 | IPR005175 | - | |
Sed05g0860 | 289 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 29 | 289 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
Sed05g0860 | 289 | ProSiteProfiles | PPC domain profile profile. | 96 | 232 | IPR005175 | - | |
Sed05g0860 | 289 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Sed05g0860 | 289 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 100 | 212 | IPR005175 | - | |
Sed05g0860 | 289 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 96 | 225 | - | - | |
Sed05g0860 | 289 | Gene3D | - | 99 | 225 | - | - | |
Sed05g0860 | 289 | MobiDBLite | consensus disorder prediction | 220 | 259 | - | - | |
Sed05g0860 | 289 | MobiDBLite | consensus disorder prediction | 34 | 50 | - | - | |
Sed05g0860 | 289 | PIRSF | ESCAROLA | 11 | 289 | IPR014476 | GO:0003680(InterPro) | |
Sed05g0860 | 289 | FunFam | AT-hook motif nuclear-localized protein | 99 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1592 | Sed-Chr2:51479887 | Sed05g0860 | Sed-Chr5:6877873 | 1.40E-66 | dispersed | |
Sed04g2176 | Sed-Chr4:35816589 | Sed05g0860 | Sed-Chr5:6877873 | 5.40E-72 | dispersed | |
Sed05g0860 | Sed-Chr5:6877873 | Sed08g1584 | Sed-Chr8:30942651 | 6.40E-68 | dispersed | |
Sed05g0860 | Sed-Chr5:6877873 | Sed05g0863 | Sed-Chr5:6958647 | 1.20E-18 | proximal | |
Sed01g3955 | Sed-Chr1:68666267 | Sed05g0860 | Sed-Chr5:6877873 | 4.30E-103 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0860 | - | - | - | 0.0 |