Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0863 ATGGAGGGAAGAGATGGTGGTTCAAGTAGTGGGGTTACTGTTGTTGGATCAGAAGCTCCATCGGAGTACCAAATAGCTCCGAGAACCGCCGATAAACCGCCGCAGACCGACGGATCAACGCCGCCGGCAGCGGCGGCGACGACTCAACCAACTTCGGCTCCGCCGCCCACGGCGGCCTTCTCCGTTCCGGGAAAGAAGAAAAGAGGGCGACCTAGAAAATATGGACCTGACGGCTCTGTCAATACGGCTCTGTCTCCTAAGCCGATATCGTCGTCGGTGCCGCCGCCGGTGATCGATTTCTCGTCGGAAAAGAGGGGGAAAGTGCGGCCGGCGAGTGCTGTGAGCAAAAGCAAGTTCGAAGTTGATAATCTAGGTGACTGGGTTCCGTGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAATACGGGCGAGGATATCACAATGAAGATAATATCCTTTTCTCAACAAGGGCCTCAAGCTATATGCATTTTATCTGCGAACGGTGTGATCTCAAGTGTCACGCTCCGTCAGCCGGACTCCTCTGGAGGAACACTAACATATGAGGGTCGATTCGAAATATTGTCCCTGTCCGGCTCATTCATGCCTAGTGATAATGGAGGAACAAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTGGCAAGTCCAGACGGGCGTGTCGTAGGCGGTGGGGTTGCTGGTCTATTAGTAGCTGCAGGGCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACAGGAGCAGAAACCTAAAAAACCAAAACAAGATGCCATTTCAACAGCCTCACCAACCGCTGCCATTCCGATATCTTGTGTTGATCCTAAGGCCAACCTCTCGCCTTCCGGTTCCTTTCGTGGCAATAACTGGTCGATTCTGCCGAATGATTCAAGGAATAAGCCAACTGATATCAATGTATCTCTACCCACTGCATGA 966 50.93 MEGRDGGSSSGVTVVGSEAPSEYQIAPRTADKPPQTDGSTPPAAAATTQPTSAPPPTAAFSVPGKKKRGRPRKYGPDGSVNTALSPKPISSSVPPPVIDFSSEKRGKVRPASAVSKSKFEVDNLGDWVPCSVGANFTPHIITVNTGEDITMKIISFSQQGPQAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAAGPVQVVVGSFLSGNQQEQKPKKPKQDAISTASPTAAIPISCVDPKANLSPSGSFRGNNWSILPNDSRNKPTDINVSLPTA 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6958647 6963511 + Sed0023143.1 Sed05g0863 713489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0863 321 ProSiteProfiles PPC domain profile profile. 133 275 IPR005175 -
Sed05g0863 321 MobiDBLite consensus disorder prediction 288 321 - -
Sed05g0863 321 Gene3D - 138 268 - -
Sed05g0863 321 CDD DUF296 137 228 IPR005175 -
Sed05g0863 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 290 IPR039605 GO:0003680(InterPro)
Sed05g0863 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 251 IPR005175 -
Sed05g0863 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 256 - -
Sed05g0863 321 MobiDBLite consensus disorder prediction 33 55 - -
Sed05g0863 321 MobiDBLite consensus disorder prediction 1 105 - -
Sed05g0863 321 FunFam AT-hook motif nuclear-localized protein 1-like 138 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3958 Sed-Chr1:68725230 Sed05g0863 Sed-Chr5:6958647 1.50E-147 dispersed
Sed02g1587 Sed-Chr2:51429520 Sed05g0863 Sed-Chr5:6958647 2.20E-91 dispersed
Sed05g0863 Sed-Chr5:6958647 Sed09g0064 Sed-Chr9:499521 9.90E-62 dispersed
Sed05g0860 Sed-Chr5:6877873 Sed05g0863 Sed-Chr5:6958647 1.20E-18 proximal
Sed04g0750 Sed-Chr4:6072630 Sed05g0863 Sed-Chr5:6958647 4.90E-103 transposed
Sed12g0242 Sed-Chr12:1406829 Sed05g0863 Sed-Chr5:6958647 5.00E-75 wgd
Sed13g0195 Sed-Chr13:1277102 Sed05g0863 Sed-Chr5:6958647 7.60E-68 wgd
Sed05g0863 Sed-Chr5:6958647 Sed07g1100 Sed-Chr7:8068997 4.90E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0863 - - - 0.0