Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g0877 | ATGGAACCAAACAAACTCCTCCTCACATTCCTCGCCGCTCTACTAATCCTCCTCTACACCAACCTCCGGCGACGCCGTCAACGGCGGCGACCGCCACTTCCACCGGGCCCCACCGGCGTTCCCCTCCTCGGAAACCTCCCATTTCTCGACCCGGAACTCCACACCCACTTCGCCGAACTGGGCCGAAAATACGGCCCAATAACAAAACTCCAACTCGGTCAAAAACTCGGCATCATCGTCAACTCACCCGCCCTCGCACGTGAGATCCTGAAAGACCATGACGTCACGTTCGCCAACCGCGACGTCCCACGTGCCGGCCGAGCCACCACGTACGGCGGCTCCGACATCGTTTGGACGCCGTACGGGCCGGAGTGGCGAATGCTGCGTAAGGTCTGCGTCATCAAGATGCTCAGCAATGCCACGTTGGATTCGGTCTACGAGCTCCGCCGCAGGGAGGTGAGGAAAACCGTGGCCCACTTGAACCGGCGGGCCGGTTCGCCGGTCAACGTGGGAGAACAGGGGTTTTTGACGGTTTTTAACGTGGTTACGAGCATGTTGTGGGGCGGGACGGTCGAGGGGGACGAGAGGGACCGGGTTGCGGCGGAGTTTAGGGAAACGGTGTCGGATGTAACGGAGTTGTTGATTCGGCCCAATGTTTCCGACTTTTTTCCGGTTCTGGGCCGGTTCGATTTTCAGGGTATTGAGAAGCAGATGCGTGGGTTGGCTGCGAGATTTGATGCTATTTTTGAAAAGATGATTGATCAACGGCTCAGATTTGGCGGTGGCGATGATGAAAAGAAGAATGATTTCTTGCAATTTTTGCTTAAGTTGAATCGTGAAGGTGACTCTAAAACTCCTCTAACGATGATCCACGTCAAAGCCTTGCTCATGGATATGGTGGTGGGTGGGACGGACACGTCATCAAACGCCGTAGAGTTTGCAATGGCGGAGATGATGAATAAACCAAAAACTCTAAAGAAAGCACAAGAAGAATTAGCCATAGTGGTGGGAAAAGAAAACATAGTAGAAGAATCCCACATTCAAAATCTACCATATCTCAAAGCCATAATGAAAGAAACATTGCGTTTGCATCCAATCCTACCGCTGCTAGTGCCGCACTGCCCGAGCGAGACCACCACGGTGTCCAATTACACTATCCCGAAGGGCTCTCGAGTGTTCATCAACGTCTGGGCCATTCAGCGAGACCCCGACCAATGGGAAAACCCGTTGGAGTTCGACCCGGAGAGGTTCATGGAGAGTAAGTGGGATTATAGTGGGAATGATTTTCGGTACTTCCCGTTCGGGTCCGGAAGAAGAAACTGTGCAGGGATCGCCATGGCGGAAAGAACGTTCATGTATTTGCTTGCTACGCTTTTGCATTCGTTTGATTGGAGATTGGGAAAAGGTGAGAAGTTGGATCTTGAGGAGAAATTTGGGATTGTTTTGAAGTTGAAAACGCCTCTTGTTCTTGTTCCAACGCCTAGGCTATCTAACCCCATTCTCTATGAATAA | 1512 | 52.12 | MEPNKLLLTFLAALLILLYTNLRRRRQRRRPPLPPGPTGVPLLGNLPFLDPELHTHFAELGRKYGPITKLQLGQKLGIIVNSPALAREILKDHDVTFANRDVPRAGRATTYGGSDIVWTPYGPEWRMLRKVCVIKMLSNATLDSVYELRRREVRKTVAHLNRRAGSPVNVGEQGFLTVFNVVTSMLWGGTVEGDERDRVAAEFRETVSDVTELLIRPNVSDFFPVLGRFDFQGIEKQMRGLAARFDAIFEKMIDQRLRFGGGDDEKKNDFLQFLLKLNREGDSKTPLTMIHVKALLMDMVVGGTDTSSNAVEFAMAEMMNKPKTLKKAQEELAIVVGKENIVEESHIQNLPYLKAIMKETLRLHPILPLLVPHCPSETTTVSNYTIPKGSRVFINVWAIQRDPDQWENPLEFDPERFMESKWDYSGNDFRYFPFGSGRRNCAGIAMAERTFMYLLATLLHSFDWRLGKGEKLDLEEKFGIVLKLKTPLVLVPTPRLSNPILYE | 503 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7039009 | 7042347 | - | Sed0015065.1 | Sed05g0877 | 713503 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g0877 | 503 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | P450 superfamily signature | 302 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | P450 superfamily signature | 432 | 441 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | Gene3D | Cytochrome P450 | 18 | 490 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | SUPERFAMILY | Cytochrome P450 | 34 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PANTHER | OS08G0547900 PROTEIN | 8 | 503 | - | - | |
| Sed05g0877 | 503 | CDD | CYP76-like | 62 | 492 | - | - | |
| Sed05g0877 | 503 | FunFam | Cytochrome P450 - like protein | 22 | 489 | - | - | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 395 | 419 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 431 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 311 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 354 | 372 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 85 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 177 | 195 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 291 | 308 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | PRINTS | E-class P450 group I signature | 441 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | Pfam | Cytochrome P450 | 34 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g0877 | 503 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 434 | 443 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g3971 | Sed-Chr1:68846365 | Sed05g0877 | Sed-Chr5:7039009 | 1.10E-63 | dispersed | |
| Sed05g0534 | Sed-Chr5:3927023 | Sed05g0877 | Sed-Chr5:7039009 | 1.50E-80 | dispersed | |
| Sed05g0877 | Sed-Chr5:7039009 | Sed06g2268 | Sed-Chr6:46237609 | 6.70E-89 | dispersed | |
| Sed01g3970 | Sed-Chr1:68837036 | Sed05g0877 | Sed-Chr5:7039009 | 5.40E-211 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g0877 | - | - | - | 0.0 |