Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0895 ATGGAGGTGTTTTGGATTTGGAGGAGTGGCCATTGGGTCAAAACAAGAGTGCTGCTATTTGCATTGTTCTTAGGGATTTTGATGCCTTTGGAAGCGATTGGTGTCTCTCGAAACGCAAGTGGTCGTTCTTCGAATCCGAGCGTGATGAACATTGGTGTTCTGTTCACTCATAATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCCGCTGTGGACGATGTCAATGTCGATAACAGCATTCTTCCTGGAACAAAGCTGAACTTGATCTTACACGACACAAACTGCAGCGGATTTCTTGGAACCGTGGAAGCCTTGCAGCTGATGGAAAAAGAAGTAATTGCAGCAATAGGGCCGCAGTCCTCGGGCATCGCTCACGTCATTTCCCATGTCATCAATGAACTCCATATACCGCTTCTATCATTTGGCGCTACAGATCCTACATTGTCAGCATTACAATACCCGTATTTCATCAGGACCACGCAGAGTGATTACTTCCAGATGAATGCAATTGCTGATCTGATAGATTATTTTGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAGCGGGATATCGGCATTGAGCGATGCATTGTCGAAGAAGCGAGCCAGGATCTCTTATAAGGCTGCCTTCTCTCCTGGATCACCCACTAGCGTGATAAGCGACTTGTTGGTTTCGGTAAACCTCATGGAATCTCGGGTTTATATTGTACATGTGAATCCTGACACTGGTTTATCAGTATTTTCCATTGCTAAGGAACTTCAGATGATGACCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCTTTTCTCGATTCTTCTGAAACAAATGATCCTGATGTAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGCCACCACACACCGGACAGCGATCTGAAGAAAAACTTCGTCTCGAAATGGAAGACTCTAAAATACAAGAAGAGTATAAACTTCAACTCTTATGCACTCTATGCATATGACTCTGTTTGGTTAGCAGCCCATGCTCTTCACACATTCTTTAAAGAAGGTGGCAATATATCTTTTTCTAGTGACTCAAAGTTACATGAAAACAATGAAAGCCAACTGCACTTAACATCGCTTCGAGTTTTTAATGGCGGCGAACAACTTCTACAGACAATTAAGAGAACAAACTTCACAGGTGTGAGTGGTCAGATTCAATTTGGCGACGACAGAAATTTGATTCATCCAGCCTACGATATCCTGAACATCGGTGGAACTGGTTTGCGTAGAATTGGCTACTGGTCGAATTATTCCGGTCTATCGACTATTGCACCGGAGAACCTATATACAAAGCCTCTTAATGCTTCCCCAAATAACCATCTATACAGTGTAATATGGCCGGGCGAAGTAACGACCATTCCTCGCGGATGGGTGTTCCCGCACAACGGGAAACCGTTGCAAATTGCGGTACCTAACCGTGTGAGTTACAAAGCATTTGTGTCTAAAGACAATGACCTTCCAGGAGTTCAAGGATATTGTATAGATGTTTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATACATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTTTATGAAGTTTCACAGAATAAATACGATGCAGCTGTTGGCGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAACCTTTTATGGAGTCGGGACTCGTCGTCGTTACTGTCGTTGAAGAGGAGAAGTCCAGTCCTTGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGGTGTCACTGCAATATTCTTTATTTTTGTCGGAGCAGTTGTTTGGATTCTCGAACACCGGACTAATGAAGAGTTCCGTGGTTCGCCGAGGCAACAACTAATTACAGTATTTTGGTTTAGTTTCTCCACAATGTTCTTTTCTCACAAGGAAAACACCGTAAGCACGCTCGGACGGTTGGTGCTGATAATATGGCTGTTTGTTGTGTTAATTATCAACTCGAGCTACACTGCTAGTTTGACGTCAATCTTAACGGTGCAGCAGCTAACGTCGAAGGTTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCTGTTGGAGTTCAGGAAGGGTCATTTGCAATGAATTATTTGATTGATGAGCTGAACATTGCAGAATCGAGGATCATTAAGTTGAAAAATCAAGAGGAATATGCCGATGCTCTTCGGCGTGGACCAGCAGATGGCGGGGTAGCTGCCATTGTAGACGAGCTTCCTTACGTCGAGCTTTTCTTGTCCGGTACCAATTGCATATTCAGGACAGTCGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTCGCAGTTGATTTTTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCGCGAACTGAGTGTTCGTTGAGCCTCAACAAAGTCGACCTAAACCAATTATCATTGAGTAGCTTTTGGGGACTGTTCCTAATTTGTGGCATTTCCTGCTTTGGTGCTCTTTTGATATTCTTCTTTAGATTACTATTACAATACAGAAGATCTACCCCAGAAACTCCGCCCGAAGTCGAGGAGATCGAACCTGTTAGGACGAGACGCCTCAGTCATACAACCAGCTTCATACACTTTGTAGGTCAAAGAGAAGTCAAAAAGCCTAAAAGAAAATTCATTGATATCAAACAAGCTAGCCAAAGCTCGGAGAGTCATCTTGATTCACCACCTCTTTAG 2808 43.48 MEVFWIWRSGHWVKTRVLLFALFLGILMPLEAIGVSRNASGRSSNPSVMNIGVLFTHNSVIGRSAQPAILAAVDDVNVDNSILPGTKLNLILHDTNCSGFLGTVEALQLMEKEVIAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFIRTTQSDYFQMNAIADLIDYFGWREVIAIFVDDDNGRSGISALSDALSKKRARISYKAAFSPGSPTSVISDLLVSVNLMESRVYIVHVNPDTGLSVFSIAKELQMMTSGYVWIATDWLPSFLDSSETNDPDVMNQLQGVVALRHHTPDSDLKKNFVSKWKTLKYKKSINFNSYALYAYDSVWLAAHALHTFFKEGGNISFSSDSKLHENNESQLHLTSLRVFNGGEQLLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGLRRIGYWSNYSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEVTTIPRGWVFPHNGKPLQIAVPNRVSYKAFVSKDNDLPGVQGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYNNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVEEEKSSPWAFLRPFTVQMWGVTAIFFIFVGAVVWILEHRTNEEFRGSPRQQLITVFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKVEGIDSLISSTDAVGVQEGSFAMNYLIDELNIAESRIIKLKNQEEYADALRRGPADGGVAAIVDELPYVELFLSGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDFSTAILQLSENGDLQKIHDKWLSRTECSLSLNKVDLNQLSLSSFWGLFLICGISCFGALLIFFFRLLLQYRRSTPETPPEVEEIEPVRTRRLSHTTSFIHFVGQREVKKPKRKFIDIKQASQSSESHLDSPPL 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7163067 7168863 - Sed0014428.4 Sed05g0895 713521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0895 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Sed05g0895 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Sed05g0895 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Sed05g0895 935 SUPERFAMILY Periplasmic binding protein-like II 459 825 - -
Sed05g0895 935 Gene3D - 68 412 - -
Sed05g0895 935 Gene3D - 593 732 - -
Sed05g0895 935 SMART GluR_14 484 826 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g0895 935 Pfam Ligated ion channel L-glutamate- and glycine-binding site 505 585 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g0895 935 Gene3D - 477 592 - -
Sed05g0895 935 FunFam Glutamate receptor 164 325 - -
Sed05g0895 935 SUPERFAMILY Periplasmic binding protein-like I 44 475 IPR028082 -
Sed05g0895 935 FunFam Glutamate receptor 478 594 - -
Sed05g0895 935 Pfam Ligand-gated ion channel 603 857 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g0895 935 CDD GluR_Plant 481 824 - -
Sed05g0895 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 912 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed05g0895 935 Coils Coil 720 740 - -
Sed05g0895 935 Pfam Receptor family ligand binding region 65 422 IPR001828 -
Sed05g0895 935 CDD PBP1_GABAb_receptor_plant 50 438 IPR044440 -
Sed05g0895 935 PIRSF IGluLR_plant 13 932 IPR017103 -
Sed05g0895 935 FunFam Glutamate receptor 720 828 - -
Sed05g0895 935 FunFam Glutamate receptor 594 724 - -
Sed05g0895 935 Gene3D - 777 831 - -
Sed05g0895 935 Gene3D - 164 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0893 Sed-Chr5:7163067 Sed05g0895 Sed-Chr5:7163067 0.00E+00 dispersed
Sed05g0895 Sed-Chr5:7163067 Sed13g2206 Sed-Chr13:26573312 1.60E-282 dispersed
Sed05g0894 Sed-Chr5:7163067 Sed05g0895 Sed-Chr5:7163067 0.00E+00 tandem
Sed05g0895 Sed-Chr5:7163067 Sed05g0896 Sed-Chr5:7163067 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0895 K05387 - csv:101215485 1600.1