Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0896 | ATGGAGGTGTTTTGGATTTGGAGGAGTGGCCATTGGGTCAAAACAAGAGTGCTGCTATTTGCATTGTTCTTAGGGATTTTGATGCCTTTGGAAGCGATTGGTGTCTCTCGAAACGCAAGTGGTCGTTCTTCGAATCCGAGCGTGATGAACATTGGTGTTCTGTTCACTCATAATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCCGCTGTGGACGATGTCAATGTCGATAACAGCATTCTTCCTGGAACAAAGCTGAACTTGATCTTACACGACACAAACTGCAGCGGATTTCTTGGAACCGTGGAAGCCTTGCAGCTGATGGAAAAAGAAGTAATTGCAGCAATAGGGCCGCAGTCCTCGGGCATCGCTCACGTCATTTCCCATGTCATCAATGAACTCCATATACCGCTTCTATCATTTGGCGCTACAGATCCTACATTGTCAGCATTACAATACCCGTATTTCATCAGGACCACGCAGAGTGATTACTTCCAGATGAATGCAATTGCTGATCTGATAGATTATTTTGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAGCGGGATATCGGCATTGAGCGATGCATTGTCGAAGAAGCGAGCCAGGATCTCTTATAAGGCTGCCTTCTCTCCTGGATCACCCACTAGCGTGATAAGCGACTTGTTGGTTTCGGTAAACCTCATGGAATCTCGGGTTTATATTGTACATGTGAATCCTGACACTGGTTTATCAGTATTTTCCATTGCTAAGGAACTTCAGATGATGACCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCTTTTCTCGATTCTTCTGAAACAAATGATCCTGATGTAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGCCACCACACACCGGACAGCGATCTGAAGAAAAACTTCGTCTCGAAATGGAAGACTCTAAAATACAAGAAGAGTATAAACTTCAACTCTTATGCACTCTATGCATATGACTCTGTTTGGTTAGCAGCCCATGCTCTTCACACATTCTTTAAAGAAGGTGGCAATATATCTTTTTCTAGTGACTCAAAGTTACATGAAAACAATGAAAGCCAACTGCACTTAACATCGCTTCGAGTTTTTAATGGCGGCGAACAACTTCTACAGACAATTAAGAGAACAAACTTCACAGGTGTGAGTGGTCAGATTCAATTTGGCGACGACAGAAATTTGATTCATCCAGCCTACGATATCCTGAACATCGGTGGAACTGGTTTGCGTAGAATTGGCTACTGGTCGAATTATTCCGGTCTATCGACTATTGCACCGGAGAACCTATATACAAAGCCTCTTAATGCTTCCCCAAATAACCATCTATACAGTGTAATATGGCCGGGCGAAGTAACGACCATTCCTCGCGGATGGGTGTTCCCGCACAACGGGAAACCGTTGCAAATTGCGGTACCTAACCGTGTGAGTTACAAAGCATTTGTGTCTAAAGACAATGACCTTCCAGGAGTTCAAGGATATTGTATAGATGTTTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATACATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTTTATGAAGTTTCACAGAATAAATACGATGCAGCTGTTGGCGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAACCTTTTATGGAGTCGGGACTCGTCGTCGTTACTGTCGTTGAAGAGGAGAAGTCCAGTCCTTGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGGTGTCACTGCAATATTCTTTATTTTTGTCGGAGCAGTTGTTTGGATTCTCGAACACCGGACTAATGAAGAGTTCCGTGGTTCGCCGAGGCAACAACTAATTACAGTATTTTGGTTAGTATGCTTAAACTCATTACAGGCTTTACTTTAG | 1968 | 43.19 | MEVFWIWRSGHWVKTRVLLFALFLGILMPLEAIGVSRNASGRSSNPSVMNIGVLFTHNSVIGRSAQPAILAAVDDVNVDNSILPGTKLNLILHDTNCSGFLGTVEALQLMEKEVIAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFIRTTQSDYFQMNAIADLIDYFGWREVIAIFVDDDNGRSGISALSDALSKKRARISYKAAFSPGSPTSVISDLLVSVNLMESRVYIVHVNPDTGLSVFSIAKELQMMTSGYVWIATDWLPSFLDSSETNDPDVMNQLQGVVALRHHTPDSDLKKNFVSKWKTLKYKKSINFNSYALYAYDSVWLAAHALHTFFKEGGNISFSSDSKLHENNESQLHLTSLRVFNGGEQLLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGLRRIGYWSNYSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEVTTIPRGWVFPHNGKPLQIAVPNRVSYKAFVSKDNDLPGVQGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYNNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVEEEKSSPWAFLRPFTVQMWGVTAIFFIFVGAVVWILEHRTNEEFRGSPRQQLITVFWLVCLNSLQALL | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7163067 | 7168863 | - | Sed0014428.5 | Sed05g0896 | 713522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0896 | 655 | Gene3D | - | 477 | 592 | - | - | |
Sed05g0896 | 655 | FunFam | Glutamate receptor | 478 | 594 | - | - | |
Sed05g0896 | 655 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 505 | 585 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed05g0896 | 655 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 335 | 347 | - | - | |
Sed05g0896 | 655 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 122 | 150 | - | - | |
Sed05g0896 | 655 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 62 | 78 | - | - | |
Sed05g0896 | 655 | FunFam | Glutamate receptor | 164 | 326 | - | - | |
Sed05g0896 | 655 | Gene3D | - | 68 | 412 | - | - | |
Sed05g0896 | 655 | Gene3D | - | 593 | 652 | - | - | |
Sed05g0896 | 655 | Gene3D | - | 164 | 437 | - | - | |
Sed05g0896 | 655 | Pfam | Receptor family ligand binding region | 65 | 422 | IPR001828 | - | |
Sed05g0896 | 655 | CDD | PBP1_GABAb_receptor_plant | 50 | 438 | IPR044440 | - | |
Sed05g0896 | 655 | SMART | GluR_14 | 484 | 647 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed05g0896 | 655 | SUPERFAMILY | Periplasmic binding protein-like II | 459 | 608 | - | - | |
Sed05g0896 | 655 | SUPERFAMILY | Periplasmic binding protein-like I | 44 | 475 | IPR028082 | - | |
Sed05g0896 | 655 | PANTHER | OS06G0188250 PROTEIN | 35 | 502 | IPR015683 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0894 | Sed-Chr5:7163067 | Sed05g0896 | Sed-Chr5:7163067 | 0.00E+00 | dispersed | |
Sed05g0896 | Sed-Chr5:7163067 | Sed13g2206 | Sed-Chr13:26573312 | 1.80E-195 | dispersed | |
Sed05g0895 | Sed-Chr5:7163067 | Sed05g0896 | Sed-Chr5:7163067 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0896 | K05387 | - | csv:101215485 | 1130.16 |