Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0896 ATGGAGGTGTTTTGGATTTGGAGGAGTGGCCATTGGGTCAAAACAAGAGTGCTGCTATTTGCATTGTTCTTAGGGATTTTGATGCCTTTGGAAGCGATTGGTGTCTCTCGAAACGCAAGTGGTCGTTCTTCGAATCCGAGCGTGATGAACATTGGTGTTCTGTTCACTCATAATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCCGCTGTGGACGATGTCAATGTCGATAACAGCATTCTTCCTGGAACAAAGCTGAACTTGATCTTACACGACACAAACTGCAGCGGATTTCTTGGAACCGTGGAAGCCTTGCAGCTGATGGAAAAAGAAGTAATTGCAGCAATAGGGCCGCAGTCCTCGGGCATCGCTCACGTCATTTCCCATGTCATCAATGAACTCCATATACCGCTTCTATCATTTGGCGCTACAGATCCTACATTGTCAGCATTACAATACCCGTATTTCATCAGGACCACGCAGAGTGATTACTTCCAGATGAATGCAATTGCTGATCTGATAGATTATTTTGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAGCGGGATATCGGCATTGAGCGATGCATTGTCGAAGAAGCGAGCCAGGATCTCTTATAAGGCTGCCTTCTCTCCTGGATCACCCACTAGCGTGATAAGCGACTTGTTGGTTTCGGTAAACCTCATGGAATCTCGGGTTTATATTGTACATGTGAATCCTGACACTGGTTTATCAGTATTTTCCATTGCTAAGGAACTTCAGATGATGACCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCTTTTCTCGATTCTTCTGAAACAAATGATCCTGATGTAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGCCACCACACACCGGACAGCGATCTGAAGAAAAACTTCGTCTCGAAATGGAAGACTCTAAAATACAAGAAGAGTATAAACTTCAACTCTTATGCACTCTATGCATATGACTCTGTTTGGTTAGCAGCCCATGCTCTTCACACATTCTTTAAAGAAGGTGGCAATATATCTTTTTCTAGTGACTCAAAGTTACATGAAAACAATGAAAGCCAACTGCACTTAACATCGCTTCGAGTTTTTAATGGCGGCGAACAACTTCTACAGACAATTAAGAGAACAAACTTCACAGGTGTGAGTGGTCAGATTCAATTTGGCGACGACAGAAATTTGATTCATCCAGCCTACGATATCCTGAACATCGGTGGAACTGGTTTGCGTAGAATTGGCTACTGGTCGAATTATTCCGGTCTATCGACTATTGCACCGGAGAACCTATATACAAAGCCTCTTAATGCTTCCCCAAATAACCATCTATACAGTGTAATATGGCCGGGCGAAGTAACGACCATTCCTCGCGGATGGGTGTTCCCGCACAACGGGAAACCGTTGCAAATTGCGGTACCTAACCGTGTGAGTTACAAAGCATTTGTGTCTAAAGACAATGACCTTCCAGGAGTTCAAGGATATTGTATAGATGTTTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATACATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTTTATGAAGTTTCACAGAATAAATACGATGCAGCTGTTGGCGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAACCTTTTATGGAGTCGGGACTCGTCGTCGTTACTGTCGTTGAAGAGGAGAAGTCCAGTCCTTGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGGTGTCACTGCAATATTCTTTATTTTTGTCGGAGCAGTTGTTTGGATTCTCGAACACCGGACTAATGAAGAGTTCCGTGGTTCGCCGAGGCAACAACTAATTACAGTATTTTGGTTAGTATGCTTAAACTCATTACAGGCTTTACTTTAG 1968 43.19 MEVFWIWRSGHWVKTRVLLFALFLGILMPLEAIGVSRNASGRSSNPSVMNIGVLFTHNSVIGRSAQPAILAAVDDVNVDNSILPGTKLNLILHDTNCSGFLGTVEALQLMEKEVIAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFIRTTQSDYFQMNAIADLIDYFGWREVIAIFVDDDNGRSGISALSDALSKKRARISYKAAFSPGSPTSVISDLLVSVNLMESRVYIVHVNPDTGLSVFSIAKELQMMTSGYVWIATDWLPSFLDSSETNDPDVMNQLQGVVALRHHTPDSDLKKNFVSKWKTLKYKKSINFNSYALYAYDSVWLAAHALHTFFKEGGNISFSSDSKLHENNESQLHLTSLRVFNGGEQLLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGLRRIGYWSNYSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEVTTIPRGWVFPHNGKPLQIAVPNRVSYKAFVSKDNDLPGVQGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYNNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVEEEKSSPWAFLRPFTVQMWGVTAIFFIFVGAVVWILEHRTNEEFRGSPRQQLITVFWLVCLNSLQALL 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7163067 7168863 - Sed0014428.5 Sed05g0896 713522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0896 655 Gene3D - 477 592 - -
Sed05g0896 655 FunFam Glutamate receptor 478 594 - -
Sed05g0896 655 Pfam Ligated ion channel L-glutamate- and glycine-binding site 505 585 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g0896 655 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Sed05g0896 655 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Sed05g0896 655 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Sed05g0896 655 FunFam Glutamate receptor 164 326 - -
Sed05g0896 655 Gene3D - 68 412 - -
Sed05g0896 655 Gene3D - 593 652 - -
Sed05g0896 655 Gene3D - 164 437 - -
Sed05g0896 655 Pfam Receptor family ligand binding region 65 422 IPR001828 -
Sed05g0896 655 CDD PBP1_GABAb_receptor_plant 50 438 IPR044440 -
Sed05g0896 655 SMART GluR_14 484 647 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g0896 655 SUPERFAMILY Periplasmic binding protein-like II 459 608 - -
Sed05g0896 655 SUPERFAMILY Periplasmic binding protein-like I 44 475 IPR028082 -
Sed05g0896 655 PANTHER OS06G0188250 PROTEIN 35 502 IPR015683 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0894 Sed-Chr5:7163067 Sed05g0896 Sed-Chr5:7163067 0.00E+00 dispersed
Sed05g0896 Sed-Chr5:7163067 Sed13g2206 Sed-Chr13:26573312 1.80E-195 dispersed
Sed05g0895 Sed-Chr5:7163067 Sed05g0896 Sed-Chr5:7163067 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0896 K05387 - csv:101215485 1130.16