Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0937 ATGCCGAAGGGATTGAAGAGTAAATGTCAGTCTACTTCTCATCAGTTTTTGAGGGAAAAGGCAAAGAGCCTTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAATCTGCAAGGAAGGAGAATCGTACTACAGATGTCACTGTCTTGGAGGAGCAAGTGCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATCAACCCTCCCCTGCCTCTTCATTTGTTGAGGGCAGTCTTGGATCGTTCTCGCAAGAATTAGCACGTCTTCTTGAGGATTGTGAAGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGGAAGAGCCTGATCTTCATCGCGTTCTTGCTAGCAATCCGTCAGATTTTCATCATAATGGTTTTGGTATTCCGGAGCTCCAACCGCAAAGTTTTGTTGGGTTTGAAGAGTGCAAAGTCTCTCCTCCAGTTCTACAGAATTACTCATTTTACAAATCAGACATGGCTACTCAGTCTAATACTCAAGATTTCAAATTAGATCAAAACTTGATCAGTAAGGATGATATGCCTTCTTTGGATTGCCACTTATTGGATTTTCATCAACAGTTGGACTGTGGGGTGCTTATTGGGGCAAATGTTGCTGGAGACTTTAGTCAGGACACAAAGCCCAGCATTCTCCCAAATATCTCGCCCCCACCGTCTGCTTTTATGGGGCCAATATGTGCTCTTTGGGACTGTTTCAGACCTGCTCAAGGATCTAAATGGTGCCAGGATTATTGCAGTAGCTGCCATTCTATGCTTGCAATAAATGAAGGCCTTCCAGGAATGACTCCAATATTGCGCCCTGGCGGCATTGGCTTACAGGATGGTCCACTGTTTGCTGCTCTTCTTGCAAAGACTTTGGCCAAAGAAGTTGGAATACCGGTATGTGATGGTGCTGCAAGAAAAAAATCTCCATGGAATGATCCTGAGCTTTTCGATATTTCATTTCTGGAGGGTGAGACAATCAGGGAATGGCTCTATTTCGACAAGCCTAAACGGGCCTTTGAGAGTGGTAACCGAAAGCAAAGGTCATTACCGGATTATAAAGGCCGTGGTTGGCACGAATCCAGGAAGCTGGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCCTATTACATGGATCCACAGCCATCAAGCTCACTTGAATGGCATTTGTACGAATATGATGTCAGCAATTATGATTCATTTTCATTATATAGGCTAGAACTCAAGCAAACTAATGCAAAGAAGAGTTCAAAGGGAAAACTAATAGCCGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCTGAAGGGCCTGTCGAGCTTGGACAATCCGTTAAAGGTGCGTCGAGTAAGGCGAATAATAAGGCTGATACCGTAAATATCAATCTTGCTCCGAACCATGTCTAA 1422 44.09 MPKGLKSKCQSTSHQFLREKAKSLVNDLQGIFTNLQSARKENRTTDVTVLEEQVHQMLREWNAELNQPSPASSFVEGSLGSFSQELARLLEDCEEQDDATSTLAEPKEEPDLHRVLASNPSDFHHNGFGIPELQPQSFVGFEECKVSPPVLQNYSFYKSDMATQSNTQDFKLDQNLISKDDMPSLDCHLLDFHQQLDCGVLIGANVAGDFSQDTKPSILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSMLAINEGLPGMTPILRPGGIGLQDGPLFAALLAKTLAKEVGIPVCDGAARKKSPWNDPELFDISFLEGETIREWLYFDKPKRAFESGNRKQRSLPDYKGRGWHESRKLVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDVSNYDSFSLYRLELKQTNAKKSSKGKLIADPLADLQKKMGRLTAEGPVELGQSVKGASSKANNKADTVNINLAPNHV 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7553167 7557511 - Sed0005904.1 Sed05g0937 713563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0937 473 MobiDBLite consensus disorder prediction 449 473 - -
Sed05g0937 473 PANTHER TRANSCRIPTION FACTOR VOZ1 1 468 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
Sed05g0937 473 MobiDBLite consensus disorder prediction 451 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0937 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0937 Sed-Chr5:7553167 Sed10g0277 Sed-Chr10:1603744 2.60E-135 dispersed
Sed05g0937 Sed-Chr5:7553167 Sed05g0938 Sed-Chr5:7554109 1.20E-185 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed14g1495 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 70.7 3.5e-196 682.2
Sed10g0277 . 5 482 VOZ-9 Transcription Factor Family AT1G28520 69.5 6.9e-192 667.9
Sed05g0937 . 6 445 VOZ-9 Transcription Factor Family AT1G28520 54.1 1.2e-127 454.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38485 None None None None Sed TF