Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0941 ATGGGCGACGACGAATTCTCGAATTGTTTCCTCCAAATCCCTCAAACCGGATCCAACCCGACATCTCTCGTCAAGAAGAAGCGAAACCTCCCCGGAACCCCAGATCCGGAAGCGGAAGTGATAGCGTTGTCGCCGAAGACGCTGATGGCGACGAATAGGTTCGTGTGCGAGATATGCGGGAAGGGGTTTCAAAGGGACCAAAACTTGCAGCTGCATCGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAAAGAGCCAATTAGGAAGAGAGTTTATGTGTGCCCTGAGAAGAGTTGTGTCCATCATCATCCATCAAGAGCATTGGGAGATCTCACTGGGATTAAGAAACACTTTTGTAGAAAACATGGAGAGAAGAAATGGAAGTGCGAGAAATGTTCTAAGAGATATGCTGTGCAGTCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAAGGAGTACAAGTGTGATTGTGGTACTCTATTTTCTAGGAGAGACAGCTTCATCACTCACAGAGCATTCTGCGACGCATTGGCGGAAGAAACAGCACGAGTAAACGCAGCCACAACGATAACCGCCGCGATGGCCGCGGCCGCAACCAGCAATTTCAACTACAATTTCATGGGCGGATCAGGCACAGAACAACAACAACAACCCCAATTCATGGGCAGCCAATTACATTTCCCAGCTTCAATTTTCAAGCCAATCTCCATGAACGAACCAACAACATTACTAAACCAACAACCAATGTACTGTGACCCTTTTGCTAACTCTTGCCCACCACCACAAACAACAGATTATAATCTCAGTTGGGCATTTGGAACAGCAAAGGACAACAACAACAGCAACAATAATAATCAAAATCAGGCATTGATGAGTGTTTCTTCACTGTACAGTCATCAATTACAACCAATGAACCAAACCCACGTGGCGAATATGTCAGCCACTGCTCTGCTGCAAAAAGCTGCTCAAATTGGGCCAAATTCCAGCTCAGGCCCATCCATTCCAAATGGGAGTGGATTTTGTAATAACAATAATTCTGGTTCTCCAATCCCAATTATGGGCATGGTTGGCAGTGTTGATGTGGAGAATGAGAATGAAATAATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTAGAGGGAAGTGGAACAACAAGAGGAGAAGGGCAGACAAGGGATTTTCTTGGGGTTGGTGCCAACACTATTTGCCACAATTCATCAATCAATGGATGGATTTAA 1257 45.66 MGDDEFSNCFLQIPQTGSNPTSLVKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPIRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAATTITAAMAAAATSNFNYNFMGGSGTEQQQQPQFMGSQLHFPASIFKPISMNEPTTLLNQQPMYCDPFANSCPPPQTTDYNLSWAFGTAKDNNNSNNNNQNQALMSVSSLYSHQLQPMNQTHVANMSATALLQKAAQIGPNSSSGPSIPNGSGFCNNNNSGSPIPIMGMVGSVDVENENEIMYTAKRRRTQSELEGSGTTRGEGQTRDFLGVGANTICHNSSINGWI 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7602091 7604761 + Sed0020343.1 Sed05g0941 713567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0941 418 Pfam Zinc finger, C2H2 type 54 76 IPR013087 -
Sed05g0941 418 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Sed05g0941 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Sed05g0941 418 SUPERFAMILY beta-beta-alpha zinc fingers 53 151 IPR036236 -
Sed05g0941 418 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 407 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g0941 418 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 130 154 - -
Sed05g0941 418 FunFam protein indeterminate-domain 12-like 33 102 - -
Sed05g0941 418 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 92 126 - -
Sed05g0941 418 SMART c2h2final6 131 151 IPR013087 -
Sed05g0941 418 SMART c2h2final6 54 76 IPR013087 -
Sed05g0941 418 MobiDBLite consensus disorder prediction 379 398 - -
Sed05g0941 418 FunFam protein indeterminate-domain 5, chloroplastic-like 109 188 - -
Sed05g0941 418 Gene3D Classic Zinc Finger 50 77 - -
Sed05g0941 418 Gene3D Classic Zinc Finger 90 179 - -
Sed05g0941 418 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 157 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3258 Sed-Chr4:43076231 Sed05g0941 Sed-Chr5:7602091 6.20E-96 dispersed
Sed05g0941 Sed-Chr5:7602091 Sed06g0083 Sed-Chr6:477339 2.70E-88 dispersed
Sed05g0941 Sed-Chr5:7602091 Sed05g2060 Sed-Chr5:33849322 5.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38487 PF00096 zf-C2H2 0.0017 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0941 K25870 - csv:101211656 490.73