Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0941 | ATGGGCGACGACGAATTCTCGAATTGTTTCCTCCAAATCCCTCAAACCGGATCCAACCCGACATCTCTCGTCAAGAAGAAGCGAAACCTCCCCGGAACCCCAGATCCGGAAGCGGAAGTGATAGCGTTGTCGCCGAAGACGCTGATGGCGACGAATAGGTTCGTGTGCGAGATATGCGGGAAGGGGTTTCAAAGGGACCAAAACTTGCAGCTGCATCGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAAAGAGCCAATTAGGAAGAGAGTTTATGTGTGCCCTGAGAAGAGTTGTGTCCATCATCATCCATCAAGAGCATTGGGAGATCTCACTGGGATTAAGAAACACTTTTGTAGAAAACATGGAGAGAAGAAATGGAAGTGCGAGAAATGTTCTAAGAGATATGCTGTGCAGTCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAAGGAGTACAAGTGTGATTGTGGTACTCTATTTTCTAGGAGAGACAGCTTCATCACTCACAGAGCATTCTGCGACGCATTGGCGGAAGAAACAGCACGAGTAAACGCAGCCACAACGATAACCGCCGCGATGGCCGCGGCCGCAACCAGCAATTTCAACTACAATTTCATGGGCGGATCAGGCACAGAACAACAACAACAACCCCAATTCATGGGCAGCCAATTACATTTCCCAGCTTCAATTTTCAAGCCAATCTCCATGAACGAACCAACAACATTACTAAACCAACAACCAATGTACTGTGACCCTTTTGCTAACTCTTGCCCACCACCACAAACAACAGATTATAATCTCAGTTGGGCATTTGGAACAGCAAAGGACAACAACAACAGCAACAATAATAATCAAAATCAGGCATTGATGAGTGTTTCTTCACTGTACAGTCATCAATTACAACCAATGAACCAAACCCACGTGGCGAATATGTCAGCCACTGCTCTGCTGCAAAAAGCTGCTCAAATTGGGCCAAATTCCAGCTCAGGCCCATCCATTCCAAATGGGAGTGGATTTTGTAATAACAATAATTCTGGTTCTCCAATCCCAATTATGGGCATGGTTGGCAGTGTTGATGTGGAGAATGAGAATGAAATAATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTAGAGGGAAGTGGAACAACAAGAGGAGAAGGGCAGACAAGGGATTTTCTTGGGGTTGGTGCCAACACTATTTGCCACAATTCATCAATCAATGGATGGATTTAA | 1257 | 45.66 | MGDDEFSNCFLQIPQTGSNPTSLVKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPIRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAATTITAAMAAAATSNFNYNFMGGSGTEQQQQPQFMGSQLHFPASIFKPISMNEPTTLLNQQPMYCDPFANSCPPPQTTDYNLSWAFGTAKDNNNSNNNNQNQALMSVSSLYSHQLQPMNQTHVANMSATALLQKAAQIGPNSSSGPSIPNGSGFCNNNNSGSPIPIMGMVGSVDVENENEIMYTAKRRRTQSELEGSGTTRGEGQTRDFLGVGANTICHNSSINGWI | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7602091 | 7604761 | + | Sed0020343.1 | Sed05g0941 | 713567 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0941 | 418 | Pfam | Zinc finger, C2H2 type | 54 | 76 | IPR013087 | - | |
Sed05g0941 | 418 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 56 | 76 | IPR013087 | - | |
Sed05g0941 | 418 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 54 | 76 | IPR013087 | - | |
Sed05g0941 | 418 | SUPERFAMILY | beta-beta-alpha zinc fingers | 53 | 151 | IPR036236 | - | |
Sed05g0941 | 418 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 19 | 407 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed05g0941 | 418 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 130 | 154 | - | - | |
Sed05g0941 | 418 | FunFam | protein indeterminate-domain 12-like | 33 | 102 | - | - | |
Sed05g0941 | 418 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 92 | 126 | - | - | |
Sed05g0941 | 418 | SMART | c2h2final6 | 131 | 151 | IPR013087 | - | |
Sed05g0941 | 418 | SMART | c2h2final6 | 54 | 76 | IPR013087 | - | |
Sed05g0941 | 418 | MobiDBLite | consensus disorder prediction | 379 | 398 | - | - | |
Sed05g0941 | 418 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 109 | 188 | - | - | |
Sed05g0941 | 418 | Gene3D | Classic Zinc Finger | 50 | 77 | - | - | |
Sed05g0941 | 418 | Gene3D | Classic Zinc Finger | 90 | 179 | - | - | |
Sed05g0941 | 418 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 157 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3258 | Sed-Chr4:43076231 | Sed05g0941 | Sed-Chr5:7602091 | 6.20E-96 | dispersed | |
Sed05g0941 | Sed-Chr5:7602091 | Sed06g0083 | Sed-Chr6:477339 | 2.70E-88 | dispersed | |
Sed05g0941 | Sed-Chr5:7602091 | Sed05g2060 | Sed-Chr5:33849322 | 5.20E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38487 | PF00096 | zf-C2H2 | 0.0017 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0941 | K25870 | - | csv:101211656 | 490.73 |