Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0960 ATGCCAGCTGAAAATTCAATTCCATTTGATCGAGATACAGAGCCTTTTGTGGAGGTTGATCCAACCGGAAGGTTTGGACGATATGATATTCTTCTCGGGTCTGGAGCAGTGAAAAAAGTTTACAGGGCATTTGATCAAGAGGAAGGTATAGAGGTTGCATGGAATCAGGTTCGATTGACAAATTTTAGTGGGGATCCAGTGTTCATCAATCGTCTGAGATCCGAGGTGCAGCTCCTGAGCTCGTTAAACAACAAATATATCATTGTTTGTTACAATGTTTGGAATGATGATGAACACAAAACGTTGAATTTCATTACTGAGGTGTGCACATCAGGAAATCTGCGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCGAAGCAGTTACTTGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGATCTCAACTGCAGTAACATATTTGTTAATGGCAACATTGGTCAGGTGAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGGAGGAGTCATGCAGCCCATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTATACGAGGAAGATTACACGGAGATGGTTGATATATACTCCTTTGCATTGTGTTTGCTTGAGATGGTTACAATGGAGATACCATACAGTGAATGCGATAGTGTTGCCAAGATATACAAGAAAGTGACAACGGGAATAAAGCCCCAAGCATTAAACAAGGTGGCTGATGAAGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTTCCGCTGCCGAACTTCTCAAGGACCCGTTCTTCGACGAAGTAGGAGACGAAGATTCCGAACAGACATAG 888 42.68 MPAENSIPFDRDTEPFVEVDPTGRFGRYDILLGSGAVKKVYRAFDQEEGIEVAWNQVRLTNFSGDPVFINRLRSEVQLLSSLNNKYIIVCYNVWNDDEHKTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQLLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFALCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQALNKVADEEVRAFIEKCIAQPRARPSAAELLKDPFFDEVGDEDSEQT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7896020 7899239 - Sed0020422.1 Sed05g0960 713586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0960 295 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Sed05g0960 295 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Sed05g0960 295 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 285 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed05g0960 295 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Sed05g0960 295 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Sed05g0960 295 Pfam Protein kinase domain 32 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0960 295 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0960 295 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0960 Sed-Chr5:7896020 Sed08g2940 Sed-Chr8:40156396 1.00E-121 dispersed
Sed01g0550 Sed-Chr1:4117786 Sed05g0960 Sed-Chr5:7896020 7.70E-163 wgd
Sed01g0494 Sed-Chr1:3780897 Sed05g0960 Sed-Chr5:7896020 1.20E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79143 PF00069 Pkinase 2.50E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0960 K08867 - csv:101222153 577.785