Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0961 ATGCAAGCCTCTCAGCTTCATAGAGGTCAACATACGTCTAAGAGACAGTGTTATCAGCCACTTCAAGGAGTGGATTCCTACTGTTTCTCCCAATTTCAAACTTCAGGTGGCCAATTATATTCCAACGTTCAAGACATCGGCGATCGATACTGCACTCTGGAGTCATCCTCAGGAAGCCATGGCTATGCAACTACTCACAACTCAACATCGACCTCGGCCGTTACTTTCTCCCCCAATGGGAGTCCTGTATCACAGCAGGAGACTCGTTCGAATCCTTCTGATAAACATAACTCTCCTGAAAATACGTATGGATCCCCAATAAGTGGATCCAGCATAACAGATGATGCTAGCGACTTTAGGCACAAACTGCGCAAATTGGAAGCTGTGATGCTTGGTCCTGATTCTGATGCTAATGATAATTTTGATAGTATCTACCAGGAAGGAACAGACAAACAAGAGATGGGAAGTTGGGGACAATTGATGGATGCTGTCACTAAAGGAAACTTAAAAAATACCCTTATAGCTTGTGCTAAAGCAGTATCGGATAATGATGCTTTAATGGCACAATGGCTTATGGATGAATTGCGCAAGATGGTGTCGGTTCGTGGTGAACCAAGGCAAAGGTTGGGAGCTTATATGTTGGAGGGACTGGTTGCACGGTTAGCCTCCTCGGGAAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCGAGTGCGGAGGTACTCTCTTATATGTTCGTTCTCTACGAGGTTTGCCCGTATTTCAAATTCGGTTACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGACAGAGTTCACATCATTGATTTCCAAATATCTCAAGGTACACAGTGGATCACTTTGATTCAAGCTTTTGCAAGCCGGCCCGGTGGGCCTCCTCACATTCGTATAACTGGTATAGACGATCCTGCATCAGCCTATGCGCATGGAGGCGGGCTAGATATCGTTGGGAAGAGGCTTTCCAAGTTAGCAAAGCTATTTAATGTGCCATTTGAGTTTCACTCTGTTGCCATTTCTGGCTGCGACTTTCTGCCAAAAAATCTGGGCATTCGACGAGGGGAAGCTTTAGCAGTGAACTTTGCATTCATGCTACACCATATGCCTGATGAGAGCGTAAGCACCGAAAACCATCGAGATAGGCTGTTGAGGCTTGTTAAGGGCCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACAAACACTGCTGCATTCTTTCCCCGATTCATTGAGACGCTGGATTACTACAATGCCATGTTTGAATCAATCGACGTTACTCTTCCAAGACAGCACAAGGAGCGAATCAACATCGAGCAGCACTGTCTAGCCAGGGAAGTAGTCAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGACATGAGCTACTCGGAAAGTGGAAACTGCGATTTGCAATGGCAGGATTCACTCCATACCCATTAAGCTCTTTGGTAAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAGAGAAGGGGCTCTATATCTAGGCTGGATGGATAGGGATTTGGTTGTTTCTTGTGCATGGAAGTGA 1620 45.25 MQASQLHRGQHTSKRQCYQPLQGVDSYCFSQFQTSGGQLYSNVQDIGDRYCTLESSSGSHGYATTHNSTSTSAVTFSPNGSPVSQQETRSNPSDKHNSPENTYGSPISGSSITDDASDFRHKLRKLEAVMLGPDSDANDNFDSIYQEGTDKQEMGSWGQLMDAVTKGNLKNTLIACAKAVSDNDALMAQWLMDELRKMVSVRGEPRQRLGAYMLEGLVARLASSGSSIYKSLRCKEPASAEVLSYMFVLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFASRPGGPPHIRITGIDDPASAYAHGGGLDIVGKRLSKLAKLFNVPFEFHSVAISGCDFLPKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWKLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMDRDLVVSCAWK 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7904776 7908584 - Sed0021761.1 Sed05g0961 713587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0961 539 ProSiteProfiles GRAS family profile. 160 539 IPR005202 -
Sed05g0961 539 Pfam GRAS domain family 169 539 IPR005202 -
Sed05g0961 539 MobiDBLite consensus disorder prediction 56 114 - -
Sed05g0961 539 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 142 538 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0552 Sed-Chr1:4124622 Sed05g0961 Sed-Chr5:7904776 8.90E-273 dispersed
Sed01g0553 Sed-Chr1:4124622 Sed05g0961 Sed-Chr5:7904776 8.90E-273 dispersed
Sed05g0961 Sed-Chr5:7904776 Sed08g2939 Sed-Chr8:40146524 4.70E-173 dispersed
Sed05g0961 Sed-Chr5:7904776 Sed05g0962 Sed-Chr5:7904776 0.00E+00 tandem
Sed01g2998 Sed-Chr1:29728891 Sed05g0961 Sed-Chr5:7904776 1.60E-59 transposed
Sed01g3048 Sed-Chr1:35446122 Sed05g0961 Sed-Chr5:7904776 8.10E-39 transposed
Sed01g3560 Sed-Chr1:64805173 Sed05g0961 Sed-Chr5:7904776 2.60E-60 transposed
Sed07g0281 Sed-Chr7:2261444 Sed05g0961 Sed-Chr5:7904776 2.70E-33 transposed
Sed07g2646 Sed-Chr7:41913935 Sed05g0961 Sed-Chr5:7904776 1.10E-138 transposed
Sed08g0059 Sed-Chr8:338952 Sed05g0961 Sed-Chr5:7904776 9.60E-51 transposed
Sed11g2281 Sed-Chr11:35982823 Sed05g0961 Sed-Chr5:7904776 2.50E-72 transposed
Sed01g0551 Sed-Chr1:4124622 Sed05g0961 Sed-Chr5:7904776 8.90E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38490 PF03514 GRAS 2.30E-136 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0961 K27748 - csv:101221914 962.985