Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0962 ATGCAAGCCTCTCAGCTTCATAGAGGTCAACATACGTCTAAGAGACAGTGTTATCAGCCACTTCAAGGAGTGGATTCCTACTGTTTCTCCCAATTTCAAACTTCAGGTGGCCAATTATATTCCAACGTTCAAGACATCGGCGATCGATACTGCACTCTGGAGTCATCCTCAGGAAGCCATGGCTATGCAACTACTCACAACTCAACATCGACCTCGGCCGTTACTTTCTCCCCCAATGGGAGTCCTGTATCACAGCAGGAGACTCGTTCGAATCCTTCTGATAAACATAACTCTCCTGAAAATACGTATGGATCCCCAATAAGTGGATCCAGCATAACAGATGATGCTAGCGACTTTAGGCACAAACTGCGCAAATTGGAAGCTGTGATGCTTGGTCCTGATTCTGATGCTAATGATAATTTTGATAGTATCTACCAGGAAGGAACAGACAAACAAGAGATGGGAAGTTGGGGACAATTGATGGATGCTGTCACTAAAGGAAACTTAAAAAATACCCTTATAGCTTGTGCTAAAGCAGTATCGGATAATGATGCTTTAATGGCACAATGGCTTATGGATGAATTGCGCAAGATGGTGTCGGTTCGTGGTGAACCAAGGCAAAGGTTGGGAGCTTATATGTTGGAGGGACTGGTTGCACGGTTAGCCTCCTCGGGAAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCGAGTGCGGAGGTACTCTCTTATATGTTCGTTCTCTACGAGGTTTGCCCGTATTTCAAATTCGGTTACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGACAGAGTTCACATCATTGATTTCCAAATATCTCAAGGTACACAGTGGATCACTTTGATTCAAGCTTTTGCAAGCCGGCCCGGTGGGCCTCCTCACATTCGTATAACTGGTATAGACGATCCTGCATCAGCCTATGCGCATGGAGGCGGGCTAGATATCGTTGGGAAGAGGCTTTCCAAGTTAGCAAAGCTATTTAATGTGCCATTTGAGTTTCACTCTGTTGCCATTTCTGGCTGCGACTTTCTGCCAAAAAATCTGGGCATTCGACGAGGGGAAGCTTTAGCAGTGAACTTTGCATTCATGCTACACCATATGCCTGATGAGAGCGTAAGCACCGAAAACCATCGAGATAGGCTGTTGAGGCTTGTTAAGGGCCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACAAACACTGCTGCATTCTTTCCCCGATTCATTGAGACGCTGGATTACTACAATGCCATGTTTGAATCAATCGACGTTACTCTTCCAAGACAGCACAAGGAGCGAATCAACATCGAGCAGCACTGTCTAGCCAGGGAAGTAGTCAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGACATGAGCTACTCGGAAAGTGGAAACTGCGATTTGCAATGGCAGGATTCACTCCATACCCATTAAGCTCTTTGGTAAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAGAGAAGGGGCTCTATATCTAGGCTGGATGGATAGGGATTTGGTTGTTTCTTGTGCATGGAAGTGA 1620 45.25 MQASQLHRGQHTSKRQCYQPLQGVDSYCFSQFQTSGGQLYSNVQDIGDRYCTLESSSGSHGYATTHNSTSTSAVTFSPNGSPVSQQETRSNPSDKHNSPENTYGSPISGSSITDDASDFRHKLRKLEAVMLGPDSDANDNFDSIYQEGTDKQEMGSWGQLMDAVTKGNLKNTLIACAKAVSDNDALMAQWLMDELRKMVSVRGEPRQRLGAYMLEGLVARLASSGSSIYKSLRCKEPASAEVLSYMFVLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFASRPGGPPHIRITGIDDPASAYAHGGGLDIVGKRLSKLAKLFNVPFEFHSVAISGCDFLPKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWKLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMDRDLVVSCAWK 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7904776 7908584 - Sed0021761.2 Sed05g0962 713588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0962 539 ProSiteProfiles GRAS family profile. 160 539 IPR005202 -
Sed05g0962 539 Pfam GRAS domain family 169 539 IPR005202 -
Sed05g0962 539 MobiDBLite consensus disorder prediction 56 114 - -
Sed05g0962 539 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 142 538 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0962 Sed-Chr5:7904776 Sed08g2939 Sed-Chr8:40146524 4.70E-173 dispersed
Sed05g0961 Sed-Chr5:7904776 Sed05g0962 Sed-Chr5:7904776 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38491 PF03514 GRAS 2.30E-136 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0962 K27748 - csv:101221914 962.985