Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0964 ATGTGGAGGGGTTGCTCTTGTGGAGCTGGGGTTTTTTTTCTCAAGCTCTCTAGGTGTTTACTACTACTGAGCATGTCTTTGAGCTGTAAGTTTTGTACCTCTAATGGAAAATTTTCATCTGGGTTTAAGCTGAAGAAGGCTAAGGAGCATCTTTGTTTGTTAAATTCCACTGGAAAATGGAAGAAGAAGCTTTCCTGTCTTTGGGTTTTTGCTGTAGTTATAATTTTGAGCAGTTGGGTTTCCTTGTGTTCTTTTAATGTGAATAGTCGTACAAAACAGAAGACCCATAATTTGTTAGATGAAGAAACTAGGAGTTTGATGCGCCATTTCAATGTAAGCAAGAATCAGGTTCAAGCTTTGGCTGCCCTGTTATCCGAATCAGATCGGATGTCATCCAAAGGGTGCACCAATGGTTCTGGACCTGAAACATCGCAGTTGGATGGACTTGTCTGTGCCATGAGGTTACTGTATTGGGAGCAAGGTTTGCAAAAGCAGTATGTATGGGTTGAAGAAAGTGAAGAATCCAATGTTGGGCAGTGCCCAATTCGAACTGAGAATATCCCTGAAAATTATGAGGACATAACTGTTCCATTTGCTACAGACTTACCCATCTCTTTACTTTCTACTGGAAATCGGCTTTGTGGAAAGATAATTGAACAAGCTGGAGTTCTAAGAAACTTTTTGAGAAAGCACTGGACGAGTTTCTGTAATTTGTTGATTGGATGTTTATGTGTTCTCCTTGGAGTGAAAGCGTTCCAGAAAAGATCTGGTTTCCATCTAAAATTGTGGAACAAGAAAAATTCAAAGCCAAATCAGCCATTGGTTCATCAACAGTGGGTCTTACTACGGAGAAAACAACATCAACAAGTCAAAGATTCTCCTAAAGGAGCAGGGAGATGGCTGAAGGTGCTCTTAAGAATATTTTTTGTTCTTGGGATTATCGGGTCCGTTTGGTTATTTTGGTACCTGAACAAGACAGCCATTTTGAGGAGAGAAGAAATGCTTGCGAACATGTGTGATGAGCGAGCTCGTATGTTGCAGGACCAGTTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACATTTCACCATGGAAAACAACCTTCTGCGATTGATCAGAAAACATTTGGTGAGTATACAGAAAGAACATCATTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTTACCACTCAGAAAGAGAGCAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTGACCCAGAAAATTTAGACCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTTGCTCATATAGTTTCTATCGACATGATGTCTGGAAAAGAAGATCGTGACAACATATTGCGAGCTAGAGCTTCTGGAAAGGGAGTGCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACTTTTGCTGTCTATAACACGGACCTCCCAGTGGATGCTACTCCCGAGCAACGTATTGAAGCTGCTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAACTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACGACTAACGACTCTGCTCCCATCAACATGTATGGTTCTGATTTTACTGATACCGGGCTATTGCATATCAGTAAACTTGATTTTGGAGATCCATTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACGTCCAATTCCTTGGATGGCTATCAATTCATCAGTCGGCGTCCTAATCATTACCTTGCTGGTTGGCCATATTTTTCATGCAGCCATAAGTCGGATTGCAAAGGTGGAGAATGACTATCACAAGATGATGGGGCTTAAAATTCGTGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAACGGCGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTTGAATCAACTGGATTTTGCCCGGACTGCCCATGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTGGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATACTTGATAATGTACTCTCACCTTTTTCACTCAGTTCCATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCTGGACGCTTCCGTCAAATAATTACTCATCTTGTAGGAAATTCAGTCAAGTTTACTCATAAAAAGGGACACATATTAGTCTCAGTGCATTTGGCTGATGAATTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCAAATACATAGTTGGAGGTACATCAAACAATAACTATACTACATTCAGTGGGTTACCAGTGGTGAATAGATGGAAAAGCTGGGAGGGTTTCAAAAAGTTCAGCAGGACCGATGCGGTGGAGGAACGAAAAACTATTAGATTACTTGTGACTGTTGAGGATACAGGTGTAGGAATTCCTCAAGACGCACAAAGCCGAATTTTCACTCCATTTATGCAGGCTGATAGTTCTACTTCACGGACATATGGTGGCACTGGAATAGGATTGAGTATTAGCAAACGTTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTATGGTTTCTTTCAAGAAAGGGGAAATAAGTTTACTGGATACCAGACGGCTGCATTATGATCCAGGCATTGTGGAGTTCCAAGGGCTAAGAGCATTAATAATAGATAATAGCTGCATTCGCGCAGAGGTCACGAGATATCATCTGCAGAGGATGGGGATTTCTGTTGATATAGCTCTGAGTGCAGAGTCTGCTTATCAATATCTATCTAATACTTCCAACACAAGAGCATCGACACAATTGGCCACGATCCTTATAGACAAAGACATATGGGACAAGAAAGTGGGTCTCAAGTTCCATCTTTTGTTTAAAGATCCTGTGGATAGAAGTGTGACAGATCTCCAGATGAATGCTCCAAAGCTCTTTCTCTTGGCAAACCCGATGAGCTCCGATGAGTTGAATGAACTTAAATCTTCTGGTCATGTAAATAATGTATTAGTTAAACCTCTTCAGTTAAACATGTTGGTTAGTTGCTTCCGGGAAGCCTTTGAGATCGAGAAGAGGAACCGAGTAATAACTAAAAGGCCTTCTACTCTCAAGAACCTGCTGAAAGAAAAGCATATTTTGGTTGTGGACGACAACGCAGTGAACAGAAGGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAAATGTGGAAAGGATGCTGTGGCTCTCCTCAAGCCTCCTCACAACTTTGATGCTTGCTTCATGGACCTACAAATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAAAGTATGATTACATCAGGAGAAGTGTCTACTGAGGACAATAAGGTCCATTGGCACACTCCAATATTCGCCATGACAGCAGATTTAATTCAGGCTATGAATGACGAATGTCAGAAGTGTGGGATGGATGGTTATGTGGCTAAGCCATTTGAAGAAGAGCAACTTTATTCAGCTCTAGCATGCTTTTTCGAGACTACTTGA 3756 41.35 MWRGCSCGAGVFFLKLSRCLLLLSMSLSCKFCTSNGKFSSGFKLKKAKEHLCLLNSTGKWKKKLSCLWVFAVVIILSSWVSLCSFNVNSRTKQKTHNLLDEETRSLMRHFNVSKNQVQALAALLSESDRMSSKGCTNGSGPETSQLDGLVCAMRLLYWEQGLQKQYVWVEESEESNVGQCPIRTENIPENYEDITVPFATDLPISLLSTGNRLCGKIIEQAGVLRNFLRKHWTSFCNLLIGCLCVLLGVKAFQKRSGFHLKLWNKKNSKPNQPLVHQQWVLLRRKQHQQVKDSPKGAGRWLKVLLRIFFVLGIIGSVWLFWYLNKTAILRREEMLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTSFERPLTSGVAYALKVYHSEREQFEMMHGWTIKKMETEDQTLVQDCDPENLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRDNILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPVDATPEQRIEAAVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKRPIPWMAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMGLKIRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDLNQLDFARTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVLSPFSLSSIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSVKFTHKKGHILVSVHLADELRGPVDFMDIVLRQGKYIVGGTSNNNYTTFSGLPVVNRWKSWEGFKKFSRTDAVEERKTIRLLVTVEDTGVGIPQDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFMVSFKKGEISLLDTRRLHYDPGIVEFQGLRALIIDNSCIRAEVTRYHLQRMGISVDIALSAESAYQYLSNTSNTRASTQLATILIDKDIWDKKVGLKFHLLFKDPVDRSVTDLQMNAPKLFLLANPMSSDELNELKSSGHVNNVLVKPLQLNMLVSCFREAFEIEKRNRVITKRPSTLKNLLKEKHILVVDDNAVNRRVAEGALKKYGAVVTCVKCGKDAVALLKPPHNFDACFMDLQMPEMDGYEATRQVRAVESMITSGEVSTEDNKVHWHTPIFAMTADLIQAMNDECQKCGMDGYVAKPFEEEQLYSALACFFETT 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7944764 7952290 - Sed0020999.1 Sed05g0964 713590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0964 1251 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Sed05g0964 1251 CDD REC_hyHK_CKI1_RcsC-like 1118 1244 - -
Sed05g0964 1251 FunFam Histidine kinase 4 629 720 - -
Sed05g0964 1251 PRINTS Bacterial sensor protein C-terminal signature 862 876 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g0964 1251 PRINTS Bacterial sensor protein C-terminal signature 880 890 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g0964 1251 PRINTS Bacterial sensor protein C-terminal signature 921 934 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g0964 1251 PRINTS Bacterial sensor protein C-terminal signature 897 915 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g0964 1251 ProSiteProfiles CHASE domain profile. 372 596 IPR006189 -
Sed05g0964 1251 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 711 933 IPR036890 -
Sed05g0964 1251 Gene3D - 1110 1250 - -
Sed05g0964 1251 ProSiteProfiles Histidine kinase domain profile. 664 937 IPR005467 -
Sed05g0964 1251 Gene3D - 323 375 - -
Sed05g0964 1251 Gene3D - 86 129 - -
Sed05g0964 1251 SUPERFAMILY CheY-like 1114 1245 IPR011006 -
Sed05g0964 1251 SMART CHASE_2 372 571 IPR006189 -
Sed05g0964 1251 PANTHER TWO-COMPONENT HISTIDINE KINASE 281 1246 IPR050956 -
Sed05g0964 1251 SMART HisKA_10 657 722 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g0964 1251 CDD HisKA 657 718 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g0964 1251 Gene3D - 956 1105 - -
Sed05g0964 1251 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 860 934 IPR003594 -
Sed05g0964 1251 SMART HKATPase_4 765 937 IPR003594 -
Sed05g0964 1251 ProSiteProfiles Response regulatory domain profile. 961 1093 IPR001789 GO:0000160(InterPro)
Sed05g0964 1251 Pfam CHASE domain 375 569 IPR006189 -
Sed05g0964 1251 CDD HATPase_EvgS-ArcB-TorS-like 770 931 - -
Sed05g0964 1251 Gene3D CHASE domain 376 603 IPR042240 -
Sed05g0964 1251 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 647 723 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g0964 1251 SMART REC_2 1116 1244 IPR001789 GO:0000160(InterPro)
Sed05g0964 1251 Pfam Response regulator receiver domain 1118 1244 IPR001789 GO:0000160(InterPro)
Sed05g0964 1251 Gene3D - 721 939 IPR036890 -
Sed05g0964 1251 ProSiteProfiles Response regulatory domain profile. 1117 1248 IPR001789 GO:0000160(InterPro)
Sed05g0964 1251 FunFam Histidine kinase 4 376 603 - -
Sed05g0964 1251 Gene3D - 626 720 - -
Sed05g0964 1251 Pfam His Kinase A (phospho-acceptor) domain 657 722 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g0964 1251 SUPERFAMILY CheY-like 956 1094 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0556 Sed-Chr1:4148903 Sed05g0964 Sed-Chr5:7944764 0.00E+00 dispersed
Sed01g0557 Sed-Chr1:4148903 Sed05g0964 Sed-Chr5:7944764 0.00E+00 dispersed
Sed05g0964 Sed-Chr5:7944764 Sed05g2084 Sed-Chr5:34029170 0.00E+00 dispersed
Sed05g1812 Sed-Chr5:31715207 Sed05g0964 Sed-Chr5:7944764 2.20E-43 transposed
Sed01g0554 Sed-Chr1:4148903 Sed05g0964 Sed-Chr5:7944764 0.00E+00 wgd
Sed05g0964 Sed-Chr5:7944764 Sed05g2083 Sed-Chr5:34029170 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38492 PF03924 CHASE 8.80E-34 CL0165 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0964 K14489 - csv:101221294 2089.69