Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0966 ATGGAAGATGTGTTGGTAATTAGCGGACTGATTGGGGTGCAGTTCGTGTACGCCGGAAACGCAGTGTTTCTCGGTTACCTGATGTCGTTAGGGTTTACGCCTCTCACCGTCGTCATTTGCATTGCCTTTGCTACTTTTCTGTTTCTGTGTCCTCTCGCTGTTTCTTTTGAAAGGAGCAATTGGCCCAAGAAATTCACTTTCAAGTTCATGCTTCACCTCCTTCTCATCTCCTTTGGCGGGGTAACTTTGTTCCAAACTCTGCTATTAAAAGGGATAAAGCTCACTTCTCCAGCCATGGCAACTGCCATGCCAAATCTTGCTCCTGGTCTCATCTTTGTCATTGCCTGGTGTTTTAGATTAGAGAGAGTCAAACTGAGTTGTCTGTACAGCAGAGTTAAGATTTTAGGGACATTGCTTTGTGTAGTAGGCGCCATCACAATGAGCTTACTGCATAGCACCATCACCTTACCGGCAAAAGATATGCATATATCTTTCTCATCAATTTTACTCTTCAATAAGGACAAGCTTATTGGTTGTTTGTATCTCCTGGTAGCTGTCTTCATATTATCCAGCAATGTTGTATTGCAGGCTACAGCCCTTCAAGAATTGCCCGCTCCAATGTCGTTGGGTGCCTTAACGTCGCTCATTGGAGTGTTCACAACTGCAGCTGTGCACCTACTGCAGAATCATAAGGTAGAAAACAATTTGCCAAATGCCAACATGAAGGTCTTACTCTGCTACTCTCTATTGGGAGGAATAGTGGGTGGCTTATGCTTGAGCTTCAATGGATGGGCAATGAAGAAAAGAGGGCCAGTTATGGTGTCCATTTTCAGTCCCATTGGAACAGTTATCTCTGTCATTCTCTCTGTTTTCACCTTAGGAGACACTATTTCCATTGGAAGTCTTGCTGGTATGTTCTTGATGTTCTGTGGGCTCTACTTTGTGCTTTGGGCAAAAGGAAAAGAAGGTTACTGTGATGGGAGTGGCTATCAAAGTGATGACAACTTTGATCTCGAGAAACCTTTACTCTCTTAA 1035 43.77 MEDVLVISGLIGVQFVYAGNAVFLGYLMSLGFTPLTVVICIAFATFLFLCPLAVSFERSNWPKKFTFKFMLHLLLISFGGVTLFQTLLLKGIKLTSPAMATAMPNLAPGLIFVIAWCFRLERVKLSCLYSRVKILGTLLCVVGAITMSLLHSTITLPAKDMHISFSSILLFNKDKLIGCLYLLVAVFILSSNVVLQATALQELPAPMSLGALTSLIGVFTTAAVHLLQNHKVENNLPNANMKVLLCYSLLGGIVGGLCLSFNGWAMKKRGPVMVSIFSPIGTVISVILSVFTLGDTISIGSLAGMFLMFCGLYFVLWAKGKEGYCDGSGYQSDDNFDLEKPLLS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8034085 8038250 + Sed0020968.1 Sed05g0966 713592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0966 344 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 320 - -
Sed05g0966 344 Pfam EamA-like transporter family 177 316 IPR000620 GO:0016020(InterPro)
Sed05g0966 344 Pfam EamA-like transporter family 9 148 IPR000620 GO:0016020(InterPro)
Sed05g0966 344 PANTHER WAT1-RELATED PROTEIN 11 323 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed05g0966 344 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0966 Sed-Chr5:8034085 Sed03g2950 Sed-Chr3:46460938 1.10E-26 dispersed
Sed04g1701 Sed-Chr4:31679149 Sed05g0966 Sed-Chr5:8034085 1.90E-108 transposed
Sed01g3993 Sed-Chr1:69012952 Sed05g0966 Sed-Chr5:8034085 1.10E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0966 - - - 0.0